Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033699.1 Length=10173 Score E Sequences producing significant alignments: (Bits) Value seq2801 96.9 2e-16 seq3275 82.4 5e-12 >seq2801 Length=191572 Score = 96.9 bits (106), Expect = 2e-16 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 8805 ATGCATCTACAACATGATGGGAAAGAGAGAAAAGAAACCCGCTGAGTTTGGGAAAGCAAA 8864 |||| | ||||||| |||||| |||||||| ||||| ||| ||||| || || || || Sbjct 184821 ATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAA 184880 Query 8865 AGGCAGCAGGGCCATCTGGTACATGTGGCTGGGAGCTCGGTTCCTGGAGTTTGAAGCTTT 8924 ||| || ||| ||||||||||||||||| ||| || || |||| ||||| || | Sbjct 184881 AGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCT 184940 Query 8925 GGGATTTCTCAATGAAGA 8942 ||| || || || || || Sbjct 184941 GGGCTTCCTAAACGAGGA 184958 >seq3275 Length=417686 Score = 82.4 bits (90), Expect = 5e-12 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 8806 TGCATCTACAACATGATGGGAAAGAGAGAAAAGAAACCCGCTGAGTTTGGGAAAGCAAAA 8865 ||||| ||||| | ||||||||| | || | || |||| || ||||| || |||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 8866 GGCAGCAGGGCCATCTGGTACATGTGGCT-GGGAGCTCGGTTCCTGGAGTTTGAAGCTTT 8924 || ||| | | || |||||||||||| | |||||| ||| | ||||| || || | Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCT 108716 Query 8925 GGGATTTCTCAATGAAGAC 8943 |||||| | ||||||||| Sbjct 108717 AGGATTTTTGAATGAAGAC 108735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32427889593468