Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033715.1 Length=10755 Score E Sequences producing significant alignments: (Bits) Value seq3275 96.9 2e-16 >seq3275 Length=417686 Score = 96.9 bits (106), Expect = 2e-16 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 9038 TGCGTCTACAACATGATGGGAAAACGCGAAAAGAAACACACTGAGTTTGGAGAGGCAAAG 9097 ||| | ||||| | |||||||| || || | || || | || ||||| | ||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 9098 GGAAGCCGTGCCATTTGGTTTATGTGGCTTGG-AGCGAGGTTCCTGGAGTTCGAAGCCCT 9156 |||||||| | ||||||| |||||| | || ||| | ||| | |||||||| ||||| Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGC-ATATTCTTAGAGTTCGAGGCCCT 108716 Query 9157 AGGATTCTTGAACGAAGATCACTGGTTGGAGCGTGAAAACTCAAGTGCTGGAGTGGAAGG 9216 |||||| ||||| ||||| ||| | | |||||| | | ||| ||| ||| Sbjct 108717 AGGATTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACACTGGATTTGGGGTGTCAGG 108776 Query 9217 AATGGGAGTGCACAAGCTGGGGTATGTCATGCGAGAC 9253 |||||||| || | ||||| |||||| || |||| Sbjct 108777 GCTGGGAGTGAACTACCTGGGTTATGTCCTGGAAGAC 108813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34289686154916