Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033721.1 Length=10266 Score E Sequences producing significant alignments: (Bits) Value seq2801 165 5e-37 seq3275 127 1e-25 >seq2801 Length=191572 Score = 165 bits (182), Expect = 5e-37 Identities = 175/226 (77%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 8822 AGGCCGTGGAGGACCCAAGGTTTTGGAGAATGGTCGATGAGGAGAGAGAGCTCCACCTCC 8881 |||| || | ||||| || || |||| ||||| ||||||||||||||||| ||||| | Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCT-C 184803 Query 8882 AGGGGAG-GTGC--GCAACCTGCGTGTACAACATGATGGGAAAGCGAGAGAAGAAGGCTG 8938 ||||| | |||| || | ||| ||||||||| |||||| ||| |||| |||||| | Sbjct 184804 AGGGGTGAGTGCAGGCTA--TGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCA 184861 Query 8939 GAGAGTTTGGCAAGGCAAAAGGAAGCAGGGCAATCTGGTATATGTGGCTAGGGAGTAGAT 8998 | ||||| ||||| || |||||||| ||| ||||||||| ||||||||||| || | | Sbjct 184862 GGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTT 184921 Query 8999 TCCTGGAGTTTGAGGCTTTAGGTTTCTTGAACGAGGATCACTGGGC 9044 | |||| |||||||| | || ||| | ||||||||| ||||| Sbjct 184922 TTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGGC 184967 >seq3275 Length=417686 Score = 127 bits (140), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 8822 AGGCCGTGGAGGACCCAAGGTTTTGGAGAATGGTCGATGAGGAGAGAGAGCTCCACCTCC 8881 |||| ||| ||||| || || |||| || || || ||||| ||||| || || ||| Sbjct 108521 AGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTC- 108579 Query 8882 AGGGGAG---GTGCGCAACCTGCGTGTACAACATGATGGGAAAGCGAGAGAAGAAGGCTG 8938 ||||||| || || ||| ||||||| | ||||||||||| |||| || | Sbjct 108580 AGGGGAGAATGTAGGCTG--TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCC 108637 Query 8939 GAGAGTTTGGCAAGGCAAAAGGAAGCAGGGCAATCTGGTATATGTGGCTAGGGAGTAGAT 8998 |||| |||||||| |||||||||||| | | || ||||| |||||| ||||||| | || Sbjct 108638 GAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATAT 108697 Query 8999 TCCTGGAGTTTGAGGCTTTAGGTTTCTTGAACGAGGA 9035 || | ||||| ||||| |||| || ||||| || || Sbjct 108698 TCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32725393167720