Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033723.1 Length=10251 Score E Sequences producing significant alignments: (Bits) Value seq3275 105 4e-19 seq2801 98.7 6e-17 >seq3275 Length=417686 Score = 105 bits (116), Expect = 4e-19 Identities = 181/261 (69%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 8833 TTCTGGGAGTTGGTTGACAGAGAAAGAACTCTCCACCTGGAAGGAAGATGCGAACAGTGC 8892 |||||| || | |||||| |||||| || || || ||| ||| | |||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 8893 GTTTACAACATGATGGGGAAGAGAGAGAAGAAACTTGGAGAGTTTGGGAGCGCTAAGGGC 8952 | ||||| | ||||| ||| | |||| || || |||| ||||| | ||| || || Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 8953 AGCAGAGCCATATGGTACATGTGGCTAGGGAGCAGATTTCTGGAGTTCGAGGCGCTCGGA 9012 ||| | | || |||||||||||| ||||||||| ||| | ||||||||||| || ||| Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGA 108720 Query 9013 TTCCTGAATGAGGACCATTGGGCTTCCAGAGAACACAGCCTGG--CTGGTGTGGAGGGAA 9070 || ||||||| ||| ||||| |||||| ||| |||| ||| ||| || Sbjct 108721 TTTTTGAATGAAGACGGATGGGCAAAAAGAGAAAACA--CTGGATTTGGGGTGTCAGGGC 108778 Query 9071 CGAGCTTGAACTATCTGGGTT 9091 | | ||||||| ||||||| Sbjct 108779 TGGGAGTGAACTACCTGGGTT 108799 >seq2801 Length=191572 Score = 98.7 bits (108), Expect = 6e-17 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 8890 TGCGTTTACAACATGATGGGGAAGAGAGAGAAGAAACTTGGAGAGTTTGGGAGCGCTAAG 8949 ||| | ||||||| ||||||||||||||| ||||| | | ||||| || | || || Sbjct 184822 TGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAA 184881 Query 8950 GGCAGCAGAGCCATATGGTACATGTGGCTAGGGAGCAGATTTCTGGAGTTCGAGGCGCTC 9009 || || | | || ||||||||||||||||| ||| | ||| |||| || ||||| || Sbjct 184882 GGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTG 184941 Query 9010 GGATTCCTGAATGAGGA 9026 || ||||| || ||||| Sbjct 184942 GGCTTCCTAAACGAGGA 184958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32677408720260