Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033724.1 Length=10215 Score E Sequences producing significant alignments: (Bits) Value seq2801 127 1e-25 seq3275 98.7 6e-17 >seq2801 Length=191572 Score = 127 bits (140), Expect = 1e-25 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8774 AGGCTGTTGAGGACCCAGCTTTCTGGAATCTTGTTGAGAAAGAACGTGAGTTGCACCTCA 8833 ||||||||| ||||| |||||||| | || || | || | ||| ||||||||| Sbjct 184745 AGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAGAGAGCTGCACCTCA 184804 Query 8834 CGGGACGTTGCCAGCAGTGCGTGTATAACATGATGGGGAAAAGAGAGAAAAAACGTGGGG 8893 ||| ||| || ||| |||| |||| ||||||||| ||||| || || | ||| Sbjct 184805 GGGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGG 184864 Query 8894 AGTTTGGCGTCGCGAAGGGAAGCCGAGCCATCTGGTACATGTGGCTGGGAAGCAGATTCC 8953 |||| ||| ||||| ||||| || | ||||||||||||||||| |||||| | || Sbjct 184865 AGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTT 184924 Query 8954 TTGAGTTTGAGGCGCTTGGGTTCCTCAATGAAGATCACTGGGC 8996 | || |||||||| || || ||||| || || ||| ||||| Sbjct 184925 TGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGGC 184967 >seq3275 Length=417686 Score = 98.7 bits (108), Expect = 6e-17 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 8794 TTCTGGAATCTTGTTGAGAAAGAACGTGAGTTGCACCTCACGGGACGTTGCCAGCAGTGC 8853 |||||||| ||||||| | ||| | || |||| |||| |||| || || |||| Sbjct 108541 TTCTGGAAGATTGTTGACGAGGAAAGAGAACTGCATCTCAGGGGAGAATGTAGGCTGTGC 108600 Query 8854 GTGTATAACATGATGGGGAAAAGAGAGAAAAAACGTGGGGAGTTTGGCGTCGCGAAGGGA 8913 |||| || | ||||| || | |||| | || | || |||||| ||| || ||| Sbjct 108601 ATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAAGGA 108660 Query 8914 AGCCGAGCCATCTGGTACATGTGGCTGGGAAGCAGATTCCTTGAGTTTGAGGCGCTTGGG 8973 ||||| | || |||||||||||| | || |||| |||| | ||||| ||||| || || Sbjct 108661 AGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTAGGA 108720 Query 8974 TTCCTCAATGAAGA 8987 || | |||||||| Sbjct 108721 TTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32562246046356