Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_033726.1 Length=10269 Score E Sequences producing significant alignments: (Bits) Value seq2801 147 1e-31 seq3275 89.7 3e-14 >seq2801 Length=191572 Score = 147 bits (162), Expect = 1e-31 Identities = 180/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 8809 TGGAAGGACGCAAAAGAGGCCGTTGCAGACCCACGCTTTTGGCGCATGGTGGATGAAGAG 8868 ||| || | ||||| |||| ||||||||||| | || ||| ||||||||||| ||| Sbjct 184729 TGGGAGAATGCAAACAAGGCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAG 184788 Query 8869 CGCGAACTACATCTTCAGGGGCGTTGTGC--GTCATGCGTCTACAATATGATGGGGAAGC 8926 | || || || || |||||| | |||| | |||| | ||||| | |||||||||| Sbjct 184789 AGAGAGCTGCACCT-CAGGGGTGA-GTGCAGGCTATGCTTGTACAACACGATGGGGAAGA 184846 Query 8927 GAGAGAAGAAAATTGGTGAGTTTGGCAAGGCTAAGGGCAGCAGAGCTATCTGGTACATGT 8986 |||| ||||| | ||||| ||||| || || || || | | ||||||||||||| Sbjct 184847 GAGATAAGAAGCCCAGGGAGTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGT 184906 Query 8987 GGCTGGGGAGCCGCTTTCTCGAGTTTGAGGCCTTGGGCTTCCTCAATGAAGATCACTGGG 9046 |||| || ||||| ||| | || ||||||||| |||||||||| || || ||| |||| Sbjct 184907 GGCTAGGAAGCCGTTTTTTGGAATTTGAGGCCCTGGGCTTCCTAAACGAGGATGGATGGG 184966 Query 9047 CA 9048 || Sbjct 184967 CA 184968 >seq3275 Length=417686 Score = 89.7 bits (98), Expect = 3e-14 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 8817 CGCAAAAGAGGCCGTTGCAGACCCACGCTTTTGGCGCATGGTGGATGAAGAGCGCGAACT 8876 || ||| |||| | || ||||| | || ||| || || || || || | ||||| Sbjct 108513 CGGAAACAAGGCTTTGGCCGACCCTAGATTCTGGAAGATTGTTGACGAGGAAAGAGAACT 108572 Query 8877 ACATCTTCAGGGGCGT-TGTGCGTCATGCGTCTACAATATGATGGGGAAGCGAGAGAAGA 8935 ||||| |||||| | ||| | ||| | ||||||| ||||| ||||| |||| || Sbjct 108573 GCATCT-CAGGGGAGAATGTAGGCTGTGCATGTACAATACAATGGGAAAGCGGGAGATGA 108631 Query 8936 AAATTGGTGAGTTTGGCAAGGCTAAGGGCAGCAGAGCTATCTGGTACATGTGGCTGGGGA 8995 | | || |||||||| || || || ||| | | ||| |||||||||||| | |||| Sbjct 108632 GACCCCGAGAATTTGGCAACGCAAAAGGAAGCCGCGTTATTTGGTACATGTGGTTAGGGA 108691 Query 8996 GCCGCTTTCTCGAGTTTGAGGCCTTGGGCTTCCTCAATGAAGA 9038 || || | ||||| |||||| | || || | |||||||| Sbjct 108692 GCATATTCTTAGAGTTCGAGGCCCTAGGATTTTTGAATGAAGA 108734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32734990057212