Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20magna_20[genbank_20GCA_5F001632505.1_202016-04-26] 28,801 sequences; 129,543,483 total letters Query= NC_034018.1 Length=10293 Score E Sequences producing significant alignments: (Bits) Value seq2801 118 7e-23 seq3275 102 5e-18 >seq2801 Length=191572 Score = 118 bits (130), Expect = 7e-23 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 8854 GCAGTGGAAGATCCCAAGTTTTGGGAACTGGTAGATGAAGAAAGGAAAGCC-CACTTGAG 8912 || || | ||| || | || ||| | |||| ||||| || || | ||| ||| | || Sbjct 184747 GCTGTTGCAGACCCGAGATTCTGGAAGATGGTGGATGAGGAGAG-AGAGCTGCACCTCAG 184805 Query 8913 AGGAGAGTGCCACACCTGCATCTACAACATGATGGGAAAACGTGAGAAGAAGCCAGGGGA 8972 || |||||| ||| | ||||||| |||||| || | || |||||||| |||| Sbjct 184806 GGGTGAGTGCAGGCTATGCTTGTACAACACGATGGGGAAGAGAGATAAGAAGCCCAGGGA 184865 Query 8973 ATTCGGAAAGGCAAAAGGAAGCCGAGCCATCTGGTACATGTGGCTCGGAGCCCGATTCTT 9032 ||||| || || |||||||| || | ||||||||||||||||| ||| ||| || || Sbjct 184866 GTTCGGCAATGCGAAAGGAAGTCGGGTAATCTGGTACATGTGGCTAGGAAGCCGTTTTTT 184925 Query 9033 GGAGTTTGAAGCCCTTGGATTTCTCAACGAAGAT 9066 ||| ||||| ||||| || || || ||||| ||| Sbjct 184926 GGAATTTGAGGCCCTGGGCTTCCTAAACGAGGAT 184959 >seq3275 Length=417686 Score = 102 bits (112), Expect = 5e-18 Identities = 129/177 (73%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 8929 TGCATCTACAACATGATGGGAAAACGTGAGAAGAAGCCAGGGGAATTCGGAAAGGCAAAA 8988 ||||| ||||| | |||||||| || |||| || || | ||||| || || |||||| Sbjct 108598 TGCATGTACAATACAATGGGAAAGCGGGAGATGAGACCCCGAGAATTTGGCAACGCAAAA 108657 Query 8989 GGAAGCCGAGCCATCTGGTACATGTGGCTCGGAGCCCGATTCTTGGAGTTTGAAGCCCTT 9048 |||||||| | || |||||||||||| | || | |||||| ||||| || ||||| Sbjct 108658 GGAAGCCGCGTTATTTGGTACATGTGGTTAGGGAGCATATTCTTAGAGTTCGAGGCCCTA 108717 Query 9049 GGATTTCTCAACGAAGATCACTGGATGAGC----AGAGAAAACTCAGGAGGCGGGGT 9101 |||||| | || ||||| ||||| || ||||||||| | ||| ||||| Sbjct 108718 GGATTTTTGAATGAAGA----CGGATGGGCAAAAAGAGAAAACACTGGATTTGGGGT 108770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32811765173148