Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_005214.1 Length=6423 Score E Sequences producing significant alignments: (Bits) Value seq116 109 2e-20 seq165 89.7 2e-14 >seq116 Length=396221 Score = 109 bits (120), Expect = 2e-20 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 2739 AGGTTGAGAGCCAAGGTTGTATGCATGTGTGTCTGTTCAAGAAACCGCAGCATGGTGGTC 2798 |||| ||| | ||||| ||||| | || | ||||||||||||||||||||||| Sbjct 356474 AGGTAGAGTGACAAGGAGCAATGCACATTTGCATTTTCAAGAAACCGCAGCATGGTGGAT 356533 Query 2799 TGAGAGAGATATATGTTCTTGGATTTGAAGAGAGAGTGGTCCAGCTGGTGATAGAGACCA 2858 |||| ||||| | ||||||||| | | ||||| ||| || ||||||| || ||||||| Sbjct 356534 TGAGGGAGATTTGTGTTCTTGGTATCCATGAGAGGGTGATCTAGCTGGTCATTGAGACCA 356593 Query 2859 TTGCAAGGCAAATCTGTAAACGGTTCAAATCTGAAACCTTGACCAACCCA 2908 | || | | ||||| ||| |||| | ||| ||| |||| |||||| Sbjct 356594 TAGCCAAGTCCATCTGCAAAATGTTCCCCTTTGAGACCATGACAAACCCA 356643 >seq165 Length=257158 Score = 89.7 bits (98), Expect = 2e-14 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 2763 ATGTGTGTCTGTTCAAGAAACCGCAGCATGGTGGTCTGAGAGAGATATATGTTCTTGGAT 2822 |||| || ||||||||||||| |||||||| || || | ||||| ||||| |||||| Sbjct 158041 ATGTTTGCTTGTTCAAGAAACCCCAGCATGGCGGCTTGCGCGAGATTTATGTGCTTGGAG 157982 Query 2823 TTGAAGAGAGAGTGGTCCAGCTGGTGATAGAGACCATTGCAAGGCAAATCTGTAAACGGT 2882 |||||||||| | |||| || || ||||||||||| | | || | |||| || Sbjct 157981 TTGAAGAGAGGATTTCTCAGCAGGCCATGGAGACCATTGCCATAGACATTTATAAAATGT 157922 Query 2883 TCAAATCTGAAACCTTGACCAACCCAAAG 2911 || || | ||| |||| || |||||| Sbjct 157921 TCCCATACAAGACCATGACAAATCCAAAG 157893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20437207572648