Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_028387.1 Length=2850 Score E Sequences producing significant alignments: (Bits) Value seq1147 385 9e-104 >seq1147 Length=52923 Score = 385 bits (426), Expect = 9e-104 Identities = 744/1080 (69%), Gaps = 42/1080 (4%) Strand=Plus/Minus Query 4 ATGTGCTTAATTGTGTTGTGGATTATACTACTACAATATCTGT-TATTAAACATTGTGTG 62 ||||| | || ||| ||| ||| ||||||| || || |||| | || ||||||||||| Sbjct 50693 ATGTGTTCAAGTGTACTGTAGATATTACTACTGCATTA-CTGTGTTTTGAACATTGTGTG 50635 Query 63 ACTTTAAAATAAAAACTATTGTTAGCTAAAGTTGTTGAAACTATGGCTAATTTAATAAAA 122 ||||| || || |||||||||| | ||| || ||||| |||| |||| ||| Sbjct 50634 ACTTTGAAT--AATACTATTGTTAATCA------TTGCAAATATGGTTAATATAATGAAA 50583 Query 123 TATGTAATAATGCTGCGTGTTGTTGCTGCTTTTGCAGG--AA--CAGGAATGGACTTTAT 178 ||||||| ||||| ||| |||| |||| | | || ||||| |||| | Sbjct 50582 TATGTAAATGTGCTG---GTTTTTGCCACTTTAGTGGTTCAAGCCAGGA-TGGAATACCG 50527 Query 179 GGAAAAAGACGGAAAGACAAAGGATTGTGCCATCTATGATGAAGCATGGCGTGTGGCTAA 238 || || | |||| || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 50526 TGACGTGGATGAAAAGTTGAAAGATTGTGCCATTTATGATGAAGCTTGGCGTGTTGCTAA 50467 Query 239 GTGTGCCTCTAGTTTGCGTGAAGGAAACATGATTTCAAACAAATTATTTTCTTTCTACTT 298 || || || ||| || |||| |||||| |||||||| || ||||| || ||| | Sbjct 50466 ATGCGCATCAAGTCTGATGGAAGATCGCATGATCTCAAACAAGTTGTTTTCCTTTTACCT 50407 Query 299 ACAAGTGGCTTTAAGAAAAGTACCATCATCATCAGCGTACACCTCAATCGGGTTTACTAC 358 || ||||| || | ||||| || ||||| | || || ||||| || || || || || Sbjct 50406 TCAGGTGGCCTTGCGTAAAGTTCCTTCATCCACTGCCTATACCTCCATTGGTTTCACCAC 50347 Query 359 TGGTGTGGATCGAGAATTGATAGTGGGAAAACAATCTCACTATGACTTTGATCAGTGGTT 418 ||| || || | || ||| | | || |||||||| ||| ||| || || || ||| | Sbjct 50346 TGGAGTTGAAAGGGAGTTGGTTATTGGGAAACAATCGCACGCTGATTTCGACCAATGGCT 50287 Query 419 GTACACTTTGACTTACGACCCTAGAACTATGCTAAGGAAGGTAGCTGTAATCTCTCTGCA 478 ||| ||| ||||| |||||||| | ||| | || ||| |||||| | || |||| Sbjct 50286 GTATACTGCTACTTATGACCCTAGGGCCATGTTTAGAAAGAAAGCTGTTTTGTCGATGCA 50227 Query 479 CAGAGAGTACACAAGGCCGGTGTTGTTCTTTTCTAAGACGGTGCCTGAGGAACTGCCTGT 538 | ||| |||| | || || |||| || || ||||| |||||||| | || | Sbjct 50226 AAAAGACTACATGAAACCAGTACTGTTTTTCTCGAAGACTGTGCCTGACTCTATACCACT 50167 Query 539 ATGGGACGATCTAATGGTG---CCAAGCTTGCGACTAGCGGGAAGCGGAAGGGAATTCTT 595 ||||| ||| |||| | || || ||||| ||||| || | |||| ||| ||||| Sbjct 50166 CTGGGATGAT--AATGTTAATACCTAGTTTGCGTCTAGCTGGCAATGGAATGGATTTCTT 50109 Query 596 TATCTACAAAGATAAAAATGCCTCT-CCTTTCTCCCCCAGTAATGCGGAGAGCTGCAGTG 654 | || || || | || | ||||| || | | | || | ||| | Sbjct 50108 CCTGTATAAGTCTAGGGAAGCTGCAMCCTTTGGAGCCGACACA-GAAGACAACTGTGCGG 50050 Query 655 CTTTCTATGATTGGGAAAATAGGGAAAGTTTTGAAGATGCTTTAGGAAGTGTAATGATTA 714 |||| ||||| ||||| | | ||||| |||||||| || ||||| | | | ||||||| Sbjct 50049 CTTTTTATGAATGGGAGAGCCGTGAAAGCTTTGAAGAAGCATTAGGTAAT-TCATGATTA 49991 Query 715 TGGACCCGAGATTGTGGTGCCCTGCTATGGAAAGTAACAGGTTCGACATTGTGGTTGGTG 774 ||||||| | |||| || ||||||||||| |||| | | |||||| | ||||| |||| Sbjct 49990 TGGACCCCAAGCTGTGTTGTCCTGCTATGGACAGTACCCGCTTCGACGTAGTGGTGGGTG 49931 Query 775 ACTTAGAGGAAATTAAGACGACCTCTTTGGACT--CCAAGCTTCAGTACCAATCTATATG 832 | | ||||| || || ||| ||| || | ||||| || |||||| | || || Sbjct 49930 ATATTGAGGAGATAAAAGTGACTAACATGG-CTGGCGAAGCT-CAATACCAAACGATTTG 49873 Query 833 GGAGGTAACAAAGAAAGGAACTGAAGGTGGGCGTTTGGATGAAAATTATTTATCGGTTTT 892 ||| || ||||||||||||| | || || | || ||||||| ||| | |||||||| Sbjct 49872 GGAAGTGACAAAGAAAGGAAGCTATGGCGGTAGGTTAGATGAAACTTACTCGTCGGTTTT 49813 Query 893 TTAGATAATCAGGATGAGGCAAAAAAGCTGACTGATACTGTACAGGGTAAAATTAAGACT 952 |||||| ||| |||| || || ||||| | ||||||||||||||||||| Sbjct 49812 TTAGATGTACAGAATGAAGCCGTTGTGCCGACTGTGCCAAAACAGGGTAAAATTAAGACT 49753 Query 953 ---AAAGTAGATAATCAAAAT-----AATTTTAAGGATTCTAATATTAAGATTAG----T 1000 || | ||||||||||| || | | | | || | ||||| |||| | Sbjct 49752 GTAAATACAAATAATCAAAATGTCCAAAATATGGGCAAAGTAGTTTTAAGTTTAGTAGAT 49693 Query 1001 AATAAATTAGATAATAAGTTAACTGATACATTGGAAATAACTGTGGAAACGGAAACGGAA 1060 |||||| | | |||||||||| ||| | ||| |||||||||||||||||| ||||| Sbjct 49692 AATAAAATTAAGAATAAGTTAAAAGATTTACCGGATATAACTGTGGAAACGGAATCGGAA 49633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9007444614575