Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_031240.1 Length=11541 Score E Sequences producing significant alignments: (Bits) Value seq5183 91.5 1e-14 >seq5183 Length=1376 Score = 91.5 bits (100), Expect = 1e-14 Identities = 196/290 (68%), Gaps = 10/290 (3%) Strand=Plus/Plus Query 8339 TCTGCATATTTAGGCTCATCAACCCTTGAATCAACTAGCATTTTACAGCACTGGGAAAAA 8398 || ||||||||||| || || || |||||||| ||||| || | | |||||||| Sbjct 956 TCAGCATATTTAGGATCCTCCACTTCGGAATCAACCAGCATATTGCGCCCATGGGAAAAG 1015 Query 8399 GAGACTAAAGTTCCT-TTATTGAGACGAGCAGCAAATTTAAGGAATTCTATCGGATGGTT 8457 || || | | ||| |||| || ||||||| | | ||||| | ||||||||||| Sbjct 1016 GAAACAGACTTACCTGTTATACGGA-GAGCAGCTGACATGAGGAAGGCAATCGGATGGTT 1074 Query 8458 CATTCAGCCCGGATCTGCACTGGCACAAAGCATATTAAACAATCTAAGATCATTAACAGG 8517 ||| | | |||||| ||||| | ||| | || |||||| || || || || Sbjct 1075 CATCAAACATGGATCTAACTTGGCAGACGCAATAATTAAGAATCTAGAGTCCTTGACTGG 1134 Query 8518 TGAAGACTGGGGTGAACATATCAG----AGAATTTAAAAGAACAGGATCAGCATTACATC 8573 || || |||| || ||||| | |||| |||||||| ||||| |||||| Sbjct 1135 GGAGGAGTGGG----ACTCATCAGGTCCTGGATTTTTTAGAACAGGGTCAGCCTTACATA 1190 Query 8574 GATTTAGTTGTTCAAGGCAAAGTAGTGGAGGTTATGCAGCTCAAAATCCT 8623 |||| ||||| || ||| ||||||||| || | || ||| |||| Sbjct 1191 GATTCTCCTGTTCCAGACAACCTAGTGGAGGCTACTCCGCACAATGTCCT 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36812664608460