Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq5183 78.8 7e-11 >seq5183 Length=1376 Score = 78.8 bits (86), Expect = 7e-11 Identities = 204/298 (68%), Gaps = 11/298 (4%) Strand=Plus/Plus Query 8306 AAAAGGGTCTTGT-TCCGCGTATTTGGGCTCCTCCACCCTGGAGTCAACCAGCATATTAC 8364 ||| ||||| | | || || ||||| || |||||||| ||| |||||||||||||| | Sbjct 942 AAAGGGGTCCTCTATCAGCATATTTAGGATCCTCCACTTCGGAATCAACCAGCATATTGC 1001 Query 8365 AGCACTGGGAAAAAGAGACTCGAATT-CCCCTTCTCAAAAGGGCTGC-GTCATTGAGAAA 8422 | |||||||| || || || || || || | || || || | || |||| || Sbjct 1002 GCCCATGGGAAAAGGAAAC-AGACTTACCTGTTATACGGAGAGCAGCTGACA-TGAGGAA 1059 Query 8423 CGCAATAGGATGGTTTGTTGATCCTGACTCAAACCTTGCCCGCAGC-ATATTAAATAATC 8481 ||||| |||||||| | | | || || || |||| | | || ||| | || |||| Sbjct 1060 GGCAATCGGATGGTTCATCAAACATGGATCTAA-CTTGGCAGACGCAATAATTAAGAATC 1118 Query 8482 TATACTCATTGACAGGGGAGAGTTGGGACGACAACA--TCAAAGGGTTCAAAAGGACAGG 8539 || | || ||||| |||||| |||||| || || || || || || ||||| Sbjct 1119 TAGAGTCCTTGACTGGGGAGGAGTGGGAC-TCATCAGGTC-CTGGATTTTTTAGAACAGG 1176 Query 8540 ATCTGCTTTACATCGATTTAATTGCTCTAGACAAAGTAATGGAGGTTACACAGCGCAA 8597 || || |||||| |||| || || |||||| || |||||| ||| | || ||| Sbjct 1177 GTCAGCCTTACATAGATTCTCCTGTTCCAGACAACCTAGTGGAGGCTACTCCGCACAA 1234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36265514182728