Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq7137 132 3e-27 >seq7137 Length=338409 Score = 132 bits (146), Expect = 3e-27 Identities = 366/553 (66%), Gaps = 30/553 (5%) Strand=Plus/Minus Query 6601 AGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAATCGAGAGAACTCATGAATTTTTTGA 6660 ||| ||||| || ||| | |||||||| ||| || |||||||||||| || ||||| Sbjct 155897 AGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGA 155838 Query 6661 GAAAAGTCTTATATACTACAATGGAAGACCAGACTTGATGCGTGT---TCACAACAACAC 6717 ||| || || || || | |||| ||| |||| |||||| ||| | | || Sbjct 155837 GAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGATGGTAAGGT 155778 Query 6718 ACTGATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGG 6777 ||| ||| || ||||| |||| |||| | || |||| || ||||||||||| Sbjct 155777 TGTGAACAAGACA---TCCCAGAGAGTCTGTTATAACGGCCAAGCCGGGGGACTGGAAGG 155721 Query 6778 TCTACGGCAAAAAGGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAAT 6837 | |||| ||||| ||||||| || | ||||| || ||| | ||| | | |||| Sbjct 155720 TTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCT----AGAAAATCAAAAAG 155665 Query 6838 CAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACAGTA 6897 | || || | ||| ||| |||| ||||| ||| |||||||||| | |||||||| Sbjct 155664 TACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATATATACACAGTA 155605 Query 6898 TAAAACGAAGAAATCG---AG-AAACGTTGTAGAATTACAGGGTGCTCTCAATCAAATGG 6953 ||| | | | || || |||| || ||| | | | | | |||| | || Sbjct 155604 TAAGCCTCATACTACGGATAGTAAAC--TGAAGACTCATA---TCCAAGAAATCTCAAGG 155550 Query 6954 TTTCTAATAATGAGAAAATTATGACTGCAAT---CAAAATAGGGACAGGGAAGTTAGGAC 7010 || |||||||| || |||| ||| || || || ||| | || | | | Sbjct 155549 -----AACAATGAGAACATCATGA--AAAATGTGGAAGAT-GGAACACGAGAGCTGGCCC 155498 Query 7011 TTTTGATAAATGACGATGAGACTATGCAATCTGCAGATTACTTGAATTATGGAAAAATAC 7070 || | || || | |||||||||||| | |||| ||||| |||||||||||||||| | Sbjct 155497 TTATCATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCC 155438 Query 7071 CGATTTTCCGTGGAGTGATTAGAGGGTTAGAGACCAAGAGATGGTCACGAGTGACTTGTG 7130 | | || |||||| ||| | | ||||||| ||||| || | | ||||| |||| Sbjct 155437 AGGTGTTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTG 155378 Query 7131 TCACCAATGACCA 7143 | ||||| || Sbjct 155377 CAGCTAATGATCA 155365 Score = 107 bits (118), Expect = 1e-19 Identities = 277/416 (67%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 6731 ACCTCCCAACGAGTTTGTTGGCAAGGACAAGAGGGTGGACTGGAAGGTCTACGGCAAAAA 6790 || ||||| |||| |||||| | || |||| || |||||||||||| |||| ||||| Sbjct 146566 ACATCCCAGAGAGTCTGTTGGAACGGCCAAGCCGGGGGACTGGAAGGTTTACGCCAAAAG 146507 Query 6791 GGATGGACTATCCTCAATCTACTGGTTATTCAAAGAGAGGCTAAAATCAGAAACACTGCT 6850 ||||||| || | ||||| || ||| | ||| || |||| | || || | Sbjct 146506 GGATGGAGTACCGCGAATCTGCTTGTTCTAAAAAATGA----AAAAGTACGAATACAGAG 146451 Query 6851 GTCAAAGTCTTGGCACAAGGTGATAATCAAGTTATTTGCACACAGTATAAAACGAAGAAA 6910 ||| ||| |||| |||| ||| |||||||||| | ||| ||||||| | | | Sbjct 146450 GTCCAAGCAGTGGCTTAAGGAGATGATCAAGTTATATATACAAAGTATAAGCCTCACACT 146391 Query 6911 TCGAGAAACGTTGTAGAATTACAGGGTGCTCTCAATCAAATGGTTTCTAATAATGAGAAA 6970 || || | ||| || | || | | || | |||| || |||||||| Sbjct 146390 GCG-GATA-GTT----AACTGAAGACTTATATCCAAGAAATCTCAAAGAACAATGAGAAC 146337 Query 6971 ATTATGACTGCAAT---CAAAATAGGGACAGGGAAGTTAGGACTTTTGATAAATGACGAT 7027 || |||| ||| || || || ||| | ||| | | ||| | || || | ||| Sbjct 146336 ATCATGA--AAAATGTGGAAGAT-GGAACACGAAAGCTGGCCCTTATCATTAACAATGAT 146280 Query 7028 GAGACTATGCAATCTGCAGATTACTTGAATTATGGAAAAATACCGATTTTCCGTGGAGTG 7087 ||||||||||| |||| ||||| |||||||||||||||| | | | || |||||| Sbjct 146279 GAGACTATGCAGTCTGGTGATTATTTGAATTATGGAAAAACGCAGGTGTTTCGTGGAAAT 146220 Query 7088 ATTAGAGGGTTAGAGACCAAGAGATGGTCACGAGTGACTTGTGTCACCAATGACCA 7143 ||| | || ||||| | ||||| || | | ||||| |||| | ||||| || Sbjct 146219 ATTCGCGGACTAGAGGCAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAATGATCA 146164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35596523660000