Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_020806.1 Length=11088 Score E Sequences producing significant alignments: (Bits) Value seq7137 140 2e-29 >seq7137 Length=338409 Score = 140 bits (154), Expect = 2e-29 Identities = 217/308 (70%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 6554 TTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAAT 6613 ||||||||||||||||||||||| |||| | ||||||| | || | ||| |||||||| | Sbjct 155904 TTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGT 155845 Query 6614 TCTTTGAGAAAAGTCTCATCTATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATG 6673 |||||||||| || ||||| |||| ||||| || | ||||||||| ||| |||| Sbjct 155844 TCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGATG 155785 Query 6674 GAAGACTTGTGAACACAACGAAGCAATTGGTTTGTTGGGAAGGACAGGCAGGCGGATTAG 6733 | | ||||||||| || || || |||| | || || || || ||| | | Sbjct 155784 GTAAGGTTGTGAACAAGACATCCCAGAGAGTCTGTTATAACGGCCAAGCCGGGGGACTGG 155725 Query 6734 AGGGGTTAAGACAGAAGGGATGGAGCATCTTAAACTTATTGGTTATTCAAAGGGAATCCA 6793 | || ||| | || ||||||||||| | | || || || ||| || |||| | Sbjct 155724 AAGGTTTACGCCAAAAGGGATGGAGTACCGCGAA---TCTGCTTGTTC-TAGAAAATCAA 155669 Query 6794 AGATTCGGAACACAGCAGTTAAAGTCCTTGCACAAGGTGATAATCAAGTAATATGCACAC 6853 | | | ||| |||| || ||| | || ||||| ||| ||||||| |||| |||| Sbjct 155668 AAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATATATACAC 155609 Query 6854 AGTACAAG 6861 |||| ||| Sbjct 155608 AGTATAAG 155601 Score = 104 bits (114), Expect = 2e-18 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 6554 TTTTTAAAGTCATGGGTCAATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAAT 6613 ||||||||||||||||||||||| |||| | ||||||| | || | ||| |||||||| | Sbjct 154225 TTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGT 154166 Query 6614 TCTTTGAGAAAAGTCTCATCTATTATAATG 6643 |||||||||| || ||||| |||| ||||| Sbjct 154165 TCTTTGAGAATAGCCTCATTTATTCTAATG 154136 Score = 80.6 bits (88), Expect = 2e-11 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 6572 AATTCTTGGGGTTTCCCAACCTTATATCGAGGACTCATGAATTCTTTGAGAAAAGTCTCA 6631 ||||| |||| | ||||||| | || | ||| |||||||| ||||||||||| || |||| Sbjct 150578 AATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGAGAATAGCCTCA 150519 Query 6632 TCTATTATAATGGAAGGCCTGATTTGATGAAGGTGCAAGATGGAAGACTTGTGAACA 6688 | |||| ||||| || | ||||||||| ||| ||||| | |||| |||| Sbjct 150518 TTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGATGGTAAGGTTGTTAACA 150462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35362946471040