Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_024473.1
Length=11123
Score E
Sequences producing significant alignments: (Bits) Value
seq7137 123 2e-24
>seq7137
Length=338409
Score = 123 bits (136), Expect = 2e-24
Identities = 399/606 (66%), Gaps = 20/606 (3%)
Strand=Plus/Minus
Query 6504 AGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGA 6563
||||||||| || || ||||||||||| | || |||||||||||| || |||||
Sbjct 155897 AGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGA 155838
Query 6564 GAAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACA-T 6622
||| ||| | ||||||| |||| | | ||| | ||| | || |||| | |
Sbjct 155837 GAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGATGGTAAGGT 155778
Query 6623 TGTGTAATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGAC 6682
|||| || || || | || |||| || || ||| || || |||||||
Sbjct 155777 TGTG-AACAAGACATCCCAGAGAGTCTGTTATAACGGCCAAGCCGGGGGACTGGAAGGTT 155719
Query 6683 TAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAATTC 6742
|| | |||||||||||||||| | |||||| | ||| | ||| || ||| | |
Sbjct 155718 TACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCTAGAAAATCAA---AAAGTAC 155662
Query 6743 GAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATACA 6802
||| |||| || | | | || || |||||| |||| ||||||| || || || |
Sbjct 155661 GAAT-ACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATATATACACAGTATA 155603
Query 6803 AGACAAAGAAAACCAGATCAGAATTGGAATTAAGAGCAGTCTTA--CATCAGATGGCAGG 6860
|| | | | || ||| || | | |||| || || || | || || |
Sbjct 155602 AGCCTCATACTACG-GATAGTAA----ACTGAAGAC---TCATATCCAAGAAATCTCAAG 155551
Query 6861 AAACAATAATAAAATCATGGAAGAAATTAAGAGAGGGA-CA-GAGAAGTTGGGCCTAATC 6918
|||||| | || |||||| || | | | ||| ||| || |||| | ||| ||| |||
Sbjct 155550 GAACAATGAGAACATCATGAAAAATGTGGA-AGATGGAACACGAGA-GCTGGCCCTTATC 155493
Query 6919 ATAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATT 6978
|| || |||||||||||||| | || | || ||||| ||||| || |||| | |
Sbjct 155492 ATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCCAGGTG 155433
Query 6979 TTCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACT 7038
|| || ||| || | | |||||| |||||||| || | |||| || |||| ||
Sbjct 155432 TTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTGCAGCT 155373
Query 7039 AATGATCAGATCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACT 7098
||||||||| | || | | |||||||||||| | ||| | | |||||| || ||
Sbjct 155372 AATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTAACA 155313
Query 7099 GTTGCT 7104
||| ||
Sbjct 155312 GTTTCT 155307
Score = 95.1 bits (104), Expect = 9e-16
Identities = 171/245 (70%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 6862 AACAATAATAAAATCATGGAAGAAATTAAGAGAGGGA-CA-GAGAAGTTGGGCCTAATCA 6919
|||||| | || |||||| || | | | ||| ||| || |||| | ||| ||| ||||
Sbjct 154086 AACAATGAGAACATCATGAAAAATGTGGA-AGATGGAACACGAGA-GCTGGCCCTTATCA 154029
Query 6920 TAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTT 6979
| || |||||||||||||| | || | || ||||| ||||| || |||| | | |
Sbjct 154028 TTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCCAGGTGT 153969
Query 6980 TCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTA 7039
| || ||| || | | |||||| |||||||| || | |||| || |||| |||
Sbjct 153968 TTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTGCAGCTA 153909
Query 7040 ATGATCAGATCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACTG 7099
|||||||| | || | | |||||||||||| | ||| | | |||||| || || |
Sbjct 153908 ATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTAACAG 153849
Query 7100 TTGCT 7104
|| ||
Sbjct 153848 TTTCT 153844
Score = 89.7 bits (98), Expect = 4e-14
Identities = 267/407 (66%), Gaps = 20/407 (5%)
Strand=Plus/Minus
Query 6646 GTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATT 6705
|| |||||||| || ||| || || ||||||| || | ||||||||||||||||
Sbjct 146554 GTCTGTTGGAACGGCCAAGCCGGGGGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACC 146495
Query 6706 GTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTA 6765
| |||||| | ||| | ||| ||| ||| | |||| |||| || | | |
Sbjct 146494 GCGAATCTGCTTGTTCTAAAAAATGAA---AAAGTACGAAT-ACAGAGGTCCAAGCAGTG 146439
Query 6766 GCACAGGGAGATAATCAGGTTATATGCACTCAATACAAGACAAAGAAAACCAGATCAGAA 6825
|| | |||||| |||| ||||||| || | || ||| | | | | |||
Sbjct 146438 GCTTAAGGAGATGATCAAGTTATATATACAAAGTATAAGCCTCACACTGCG-GAT----- 146385
Query 6826 TTGGAATTAAGAGCAGTCTTACATC----AGATGGCAGGAAACAATAATAAAATCATGGA 6881
| |||| | || |||| ||| | || || |||||| | || |||||| |
Sbjct 146384 ----AGTTAACTGAAGACTTATATCCAAGAAATCTCAAAGAACAATGAGAACATCATGAA 146329
Query 6882 AGAAATTAAGAGAGGGA-CAGAGAAGTTGGGCCTAATCATAAATGATGATGAGACTATGC 6940
| | | | ||| ||| || ||| ||| ||| ||||| || |||||||||||||||
Sbjct 146328 AAATGTGGA-AGATGGAACACGAAAGCTGGCCCTTATCATTAACAATGATGAGACTATGC 146270
Query 6941 AATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTTTCCGGGGAGTCATAAGAGGAC 7000
| || | || ||||| ||||| || |||| | | || || ||| || | ||||
Sbjct 146269 AGTCTGGTGATTATTTGAATTATGGAAAAACGCAGGTGTTTCGTGGAAATATTCGCGGAC 146210
Query 7001 TAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTAATGATCAG 7047
|||| ||||||| || | |||| || |||| |||||||||||
Sbjct 146209 TAGAGGCAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAATGATCAG 146163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35474935534240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |