Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq7137 123 2e-24 >seq7137 Length=338409 Score = 123 bits (136), Expect = 2e-24 Identities = 399/606 (66%), Gaps = 20/606 (3%) Strand=Plus/Minus Query 6504 AGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTTGA 6563 ||||||||| || || ||||||||||| | || |||||||||||| || ||||| Sbjct 155897 AGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGA 155838 Query 6564 GAAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACA-T 6622 ||| ||| | ||||||| |||| | | ||| | ||| | || |||| | | Sbjct 155837 GAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGATGGTAAGGT 155778 Query 6623 TGTGTAATTCCACTAAGCACCGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGAC 6682 |||| || || || | || |||| || || ||| || || ||||||| Sbjct 155777 TGTG-AACAAGACATCCCAGAGAGTCTGTTATAACGGCCAAGCCGGGGGACTGGAAGGTT 155719 Query 6683 TAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAATTC 6742 || | |||||||||||||||| | |||||| | ||| | ||| || ||| | | Sbjct 155718 TACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCTAGAAAATCAA---AAAGTAC 155662 Query 6743 GAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTATATGCACTCAATACA 6802 ||| |||| || | | | || || |||||| |||| ||||||| || || || | Sbjct 155661 GAAT-ACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATATATACACAGTATA 155603 Query 6803 AGACAAAGAAAACCAGATCAGAATTGGAATTAAGAGCAGTCTTA--CATCAGATGGCAGG 6860 || | | | || ||| || | | |||| || || || | || || | Sbjct 155602 AGCCTCATACTACG-GATAGTAA----ACTGAAGAC---TCATATCCAAGAAATCTCAAG 155551 Query 6861 AAACAATAATAAAATCATGGAAGAAATTAAGAGAGGGA-CA-GAGAAGTTGGGCCTAATC 6918 |||||| | || |||||| || | | | ||| ||| || |||| | ||| ||| ||| Sbjct 155550 GAACAATGAGAACATCATGAAAAATGTGGA-AGATGGAACACGAGA-GCTGGCCCTTATC 155493 Query 6919 ATAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATT 6978 || || |||||||||||||| | || | || ||||| ||||| || |||| | | Sbjct 155492 ATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCCAGGTG 155433 Query 6979 TTCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACT 7038 || || ||| || | | |||||| |||||||| || | |||| || |||| || Sbjct 155432 TTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTGCAGCT 155373 Query 7039 AATGATCAGATCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACT 7098 ||||||||| | || | | |||||||||||| | ||| | | |||||| || || Sbjct 155372 AATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTAACA 155313 Query 7099 GTTGCT 7104 ||| || Sbjct 155312 GTTTCT 155307 Score = 95.1 bits (104), Expect = 9e-16 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 6862 AACAATAATAAAATCATGGAAGAAATTAAGAGAGGGA-CA-GAGAAGTTGGGCCTAATCA 6919 |||||| | || |||||| || | | | ||| ||| || |||| | ||| ||| |||| Sbjct 154086 AACAATGAGAACATCATGAAAAATGTGGA-AGATGGAACACGAGA-GCTGGCCCTTATCA 154029 Query 6920 TAAATGATGATGAGACTATGCAATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTT 6979 | || |||||||||||||| | || | || ||||| ||||| || |||| | | | Sbjct 154028 TTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCCAGGTGT 153969 Query 6980 TCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTA 7039 | || ||| || | | |||||| |||||||| || | |||| || |||| ||| Sbjct 153968 TTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTGCAGCTA 153909 Query 7040 ATGATCAGATCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAATGCTTTGACTG 7099 |||||||| | || | | |||||||||||| | ||| | | |||||| || || | Sbjct 153908 ATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTAACAG 153849 Query 7100 TTGCT 7104 || || Sbjct 153848 TTTCT 153844 Score = 89.7 bits (98), Expect = 4e-14 Identities = 267/407 (66%), Gaps = 20/407 (5%) Strand=Plus/Minus Query 6646 GTTTGTTGGAATGGGCAAAAAGGAGGTTTGGAAGGACTAAGACAAAAGGGATGGAGTATT 6705 || |||||||| || ||| || || ||||||| || | |||||||||||||||| Sbjct 146554 GTCTGTTGGAACGGCCAAGCCGGGGGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACC 146495 Query 6706 GTGAATCTCTTGGTTATTCAAAGGGAAGCCAAAATTCGAAACACAGCAGTGAAGGTCTTA 6765 | |||||| | ||| | ||| ||| ||| | |||| |||| || | | | Sbjct 146494 GCGAATCTGCTTGTTCTAAAAAATGAA---AAAGTACGAAT-ACAGAGGTCCAAGCAGTG 146439 Query 6766 GCACAGGGAGATAATCAGGTTATATGCACTCAATACAAGACAAAGAAAACCAGATCAGAA 6825 || | |||||| |||| ||||||| || | || ||| | | | | ||| Sbjct 146438 GCTTAAGGAGATGATCAAGTTATATATACAAAGTATAAGCCTCACACTGCG-GAT----- 146385 Query 6826 TTGGAATTAAGAGCAGTCTTACATC----AGATGGCAGGAAACAATAATAAAATCATGGA 6881 | |||| | || |||| ||| | || || |||||| | || |||||| | Sbjct 146384 ----AGTTAACTGAAGACTTATATCCAAGAAATCTCAAAGAACAATGAGAACATCATGAA 146329 Query 6882 AGAAATTAAGAGAGGGA-CAGAGAAGTTGGGCCTAATCATAAATGATGATGAGACTATGC 6940 | | | | ||| ||| || ||| ||| ||| ||||| || ||||||||||||||| Sbjct 146328 AAATGTGGA-AGATGGAACACGAAAGCTGGCCCTTATCATTAACAATGATGAGACTATGC 146270 Query 6941 AATCAGCAGACTATTTAAATTACGGGAAAATTCCAATTTTCCGGGGAGTCATAAGAGGAC 7000 | || | || ||||| ||||| || |||| | | || || ||| || | |||| Sbjct 146269 AGTCTGGTGATTATTTGAATTATGGAAAAACGCAGGTGTTTCGTGGAAATATTCGCGGAC 146210 Query 7001 TAGAAACAAAGAGATGGTCACGGGTAACATGTGTCACTAATGATCAG 7047 |||| ||||||| || | |||| || |||| ||||||||||| Sbjct 146209 TAGAGGCAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAATGATCAG 146163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35474935534240