Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq7137 93.3 3e-15 >seq7137 Length=338409 Score = 93.3 bits (102), Expect = 3e-15 Identities = 213/315 (68%), Gaps = 12/315 (4%) Strand=Plus/Minus Query 6536 TGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACATGA 6595 ||| ||||| |||||||| || ||| |||| | || || || || | |||| ||||| Sbjct 155906 TGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGA 155847 Query 6596 GTTCTTTGAACAGAGCTGGATTTATTATAATGGTAGGCCTGATTTGATGGCAGTTGTTGA 6655 ||||||||| | ||| ||||||| ||||| ||| | ||||||||||| || ||| Sbjct 155846 GTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGA 155787 Query 6656 TGG---GCGACTGATCAACTCTGGAACCAATATAGTCTGTTGGGACGGTCAAGCTGGAGG 6712 ||| | ||| ||| | | || | | |||||||| |||| ||||| || || Sbjct 155786 TGGTAAGGTTGTGAACAAGAC---ATCCCAGAGAGTCTGTTATAACGGCCAAGCCGGGGG 155730 Query 6713 GTTAGAAGGATTGAGACAGAAGGGTTGGACGGTTGTAGGACTCTTGATGATCATAAGAGA 6772 | ||||| || | || ||||| |||| || || ||| || || ||| | Sbjct 155729 ACTGGAAGGTTTACGCCAAAAGGGATGGA--GTACCGCGAATCTGCTTGTTC--TAGAAA 155674 Query 6773 AGC-TAGAGTTCGTAACACAGCTGTCAAAATTTTGGCTCAGGGAGACAACCAAGTGATCT 6831 | | | ||| || || |||| ||| || ||||||| ||||| | ||||| || | Sbjct 155673 ATCAAAAAGTACG-AATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATAT 155615 Query 6832 GCACTCAGTATAAGC 6846 || |||||||||| Sbjct 155614 ATACACAGTATAAGC 155600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35465336471680