Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq7137 89.7 4e-14 >seq7137 Length=338409 Score = 89.7 bits (98), Expect = 4e-14 Identities = 364/568 (64%), Gaps = 28/568 (5%) Strand=Plus/Minus Query 6591 TGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGATTGTTTGAAAGAACCCATGA 6650 ||| ||| ||||||||| || || |||||||||||| ||| || ||||| ||||| Sbjct 155906 TGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGA 155847 Query 6651 GTTTTTTGAATCAAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGT-----A 6705 ||| ||||| ||||||||||| | || | ||| |||| ||||||| ||| | Sbjct 155846 GTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGA 155787 Query 6706 AGAGGAGATTCGTTGATCAATAC--CACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGG 6763 | || || ||| ||| || | | || | || |||| | || || || | Sbjct 155786 TGGTAAGGTT--GTGAACAAGACATCCCAGAGA-----GTCTGTTATAACGGCCAAGCCG 155734 Query 6764 GAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTGCTGAATCTGTTAGTCATAAACA 6823 | ||| ||||||| || | ||||| ||||||||| ||||||| | || | | Sbjct 155733 GGGGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCT----A 155678 Query 6824 GGGAATCATCCATAAGAAATACAATCGTGAAAGTACTAGCGCAGGGAGACAATCAGGTCA 6883 | ||||| | | |||||| || ||| | | || || ||||| |||| || | Sbjct 155677 GAAAATCAAAAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTA 155618 Query 6884 TCTGTACTCAATATAAAACAAAAAATTACAAGAACGAGGAAGAGCTTAAAATGCTTTTAT 6943 | | ||| || ||||| | | ||| | || | | || || | || ||| Sbjct 155617 TATATACACAGTATAAGCCTCA----TACTACGGATAGTA--AACTGAAGA--CTCATAT 155566 Query 6944 C--TGCCATGGTAGATAACAATCAGACAATCATGAATAGTATCGTGACAGGGACAGGTAA 7001 | | || | |||||| ||| |||||||| | | | | || ||| | | Sbjct 155565 CCAAGAAATCTCAAGGAACAATGAGAACATCATGAAAAATGTGGAAGATGGAACACGAGA 155506 Query 7002 GTTGGGATTGATCATAAATAATGATGAGACCATGCAATCTGCAGATTACCTTAATTACGG 7061 | ||| | ||||| || ||||||||||| ||| | |||| ||||| | ||||| || Sbjct 155505 GCTGGCCCTTATCATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGG 155446 Query 7062 AAAAATGCCAGTCTTCCGAGGAATCCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGT 7121 ||||| | || || || |||| | | | | ||||||| || || || ||||||| Sbjct 155445 AAAAACCCAGGTGTTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGT 155386 Query 7122 CACATGCATCACGAATGATCAGATTCCA 7149 || || | ||||||||| ||||| Sbjct 155385 GACCTGTGCAGCTAATGATCAGGTTCCA 155358 Score = 82.4 bits (90), Expect = 5e-12 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 6958 AACAATCAGACAATCATGAATAGTATCGTGACAGGGACAGGTAAGTTGGGATTGATCATA 7017 |||||| ||| |||||||| | | | | || ||| | ||| ||| | ||||| Sbjct 146348 AACAATGAGAACATCATGAAAAATGTGGAAGATGGAACACGAAAGCTGGCCCTTATCATT 146289 Query 7018 AATAATGATGAGACCATGCAATCTGCAGATTACCTTAATTACGGAAAAATGCCAGTCTTC 7077 || ||||||||||| ||||| |||| ||||| | ||||| ||||||| || || || Sbjct 146288 AACAATGATGAGACTATGCAGTCTGGTGATTATTTGAATTATGGAAAAACGCAGGTGTTT 146229 Query 7078 CGAGGAATCCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGTCACATGCATCACGAAT 7137 || |||| | | ||| ||||| | || || || ||||||| || || | ||| Sbjct 146228 CGTGGAAATATTCGCGGACTAGAGGCAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAAT 146169 Query 7138 GATCAGATTC 7147 |||||| ||| Sbjct 146168 GATCAGGTTC 146159 Score = 80.6 bits (88), Expect = 2e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 6563 ATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTT 6622 |||| |||||| | ||||||| ||||| ||| ||||||||| || || |||||| Sbjct 154255 ATCACCAGAGAGGTCAGGCCAATGGTCCTGTTTTTAAAGTCATGGGTCAATTCCTGGGTT 154196 Query 6623 ATCCCAGATTGTTTGAAAGAACCCATGAGTTTTTTGAATCAAGCCTCATTTA 6674 |||||| ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 154195 ATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGAGAATAGCCTCATTTA 154144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35391743658720