Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_025356.1
Length=11097
Score E
Sequences producing significant alignments: (Bits) Value
seq7137 89.7 4e-14
>seq7137
Length=338409
Score = 89.7 bits (98), Expect = 4e-14
Identities = 364/568 (64%), Gaps = 28/568 (5%)
Strand=Plus/Minus
Query 6591 TGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGATTGTTTGAAAGAACCCATGA 6650
||| ||| ||||||||| || || |||||||||||| ||| || ||||| |||||
Sbjct 155906 TGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGA 155847
Query 6651 GTTTTTTGAATCAAGCCTCATTTACTACAACGGCAGACCAGACTTGATGGATGT-----A 6705
||| ||||| ||||||||||| | || | ||| |||| ||||||| ||| |
Sbjct 155846 GTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGA 155787
Query 6706 AGAGGAGATTCGTTGATCAATAC--CACTGAAAAGTTGGTGTGTTGGGAGGGTCAGGCGG 6763
| || || ||| ||| || | | || | || |||| | || || || |
Sbjct 155786 TGGTAAGGTT--GTGAACAAGACATCCCAGAGA-----GTCTGTTATAACGGCCAAGCCG 155734
Query 6764 GAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTGCTGAATCTGTTAGTCATAAACA 6823
| ||| ||||||| || | ||||| ||||||||| ||||||| | || | |
Sbjct 155733 GGGGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCT----A 155678
Query 6824 GGGAATCATCCATAAGAAATACAATCGTGAAAGTACTAGCGCAGGGAGACAATCAGGTCA 6883
| ||||| | | |||||| || ||| | | || || ||||| |||| || |
Sbjct 155677 GAAAATCAAAAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTA 155618
Query 6884 TCTGTACTCAATATAAAACAAAAAATTACAAGAACGAGGAAGAGCTTAAAATGCTTTTAT 6943
| | ||| || ||||| | | ||| | || | | || || | || |||
Sbjct 155617 TATATACACAGTATAAGCCTCA----TACTACGGATAGTA--AACTGAAGA--CTCATAT 155566
Query 6944 C--TGCCATGGTAGATAACAATCAGACAATCATGAATAGTATCGTGACAGGGACAGGTAA 7001
| | || | |||||| ||| |||||||| | | | | || ||| | |
Sbjct 155565 CCAAGAAATCTCAAGGAACAATGAGAACATCATGAAAAATGTGGAAGATGGAACACGAGA 155506
Query 7002 GTTGGGATTGATCATAAATAATGATGAGACCATGCAATCTGCAGATTACCTTAATTACGG 7061
| ||| | ||||| || ||||||||||| ||| | |||| ||||| | ||||| ||
Sbjct 155505 GCTGGCCCTTATCATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGG 155446
Query 7062 AAAAATGCCAGTCTTCCGAGGAATCCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGT 7121
||||| | || || || |||| | | | | ||||||| || || || |||||||
Sbjct 155445 AAAAACCCAGGTGTTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGACCCAGGGT 155386
Query 7122 CACATGCATCACGAATGATCAGATTCCA 7149
|| || | ||||||||| |||||
Sbjct 155385 GACCTGTGCAGCTAATGATCAGGTTCCA 155358
Score = 82.4 bits (90), Expect = 5e-12
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 6958 AACAATCAGACAATCATGAATAGTATCGTGACAGGGACAGGTAAGTTGGGATTGATCATA 7017
|||||| ||| |||||||| | | | | || ||| | ||| ||| | |||||
Sbjct 146348 AACAATGAGAACATCATGAAAAATGTGGAAGATGGAACACGAAAGCTGGCCCTTATCATT 146289
Query 7018 AATAATGATGAGACCATGCAATCTGCAGATTACCTTAATTACGGAAAAATGCCAGTCTTC 7077
|| ||||||||||| ||||| |||| ||||| | ||||| ||||||| || || ||
Sbjct 146288 AACAATGATGAGACTATGCAGTCTGGTGATTATTTGAATTATGGAAAAACGCAGGTGTTT 146229
Query 7078 CGAGGAATCCTAAGAGGATTAGAGACTAAAAGATGGTCCAGGGTCACATGCATCACGAAT 7137
|| |||| | | ||| ||||| | || || || ||||||| || || | |||
Sbjct 146228 CGTGGAAATATTCGCGGACTAGAGGCAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAAT 146169
Query 7138 GATCAGATTC 7147
|||||| |||
Sbjct 146168 GATCAGGTTC 146159
Score = 80.6 bits (88), Expect = 2e-11
Identities = 85/112 (76%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 6563 ATCATCAGAGAAAAGAATCCAATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTT 6622
|||| |||||| | ||||||| ||||| ||| ||||||||| || || ||||||
Sbjct 154255 ATCACCAGAGAGGTCAGGCCAATGGTCCTGTTTTTAAAGTCATGGGTCAATTCCTGGGTT 154196
Query 6623 ATCCCAGATTGTTTGAAAGAACCCATGAGTTTTTTGAATCAAGCCTCATTTA 6674
|||||| ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 154195 ATCCCAACTTGATTTTGAGAACTCATGAGTTCTTTGAGAATAGCCTCATTTA 154144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 35391743658720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |