Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq7137 134 1e-27 >seq7137 Length=338409 Score = 134 bits (148), Expect = 1e-27 Identities = 418/625 (67%), Gaps = 24/625 (4%) Strand=Plus/Minus Query 6877 CAACAGATATGTATTCAGAGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACG 6936 || || | |||| || | ||| |||||||||| |||| || || ||||||||| | Sbjct 155915 CAGCACAAATGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAG 155856 Query 6937 GACTCATGAGTTCTTTGAGAACAGTTTGGTTTATTTGAACATGAGACCAGATGAGATGG- 6995 |||||||||||||||||||| || | |||||| || ||| ||||| ||||| Sbjct 155855 AACTCATGAGTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGC 155796 Query 6996 TG-GTC-GATGGTAGACATGTTCGACCGAGAGGGGACATGATGTCCTGTTGGGAGGGACA 7053 || ||| ||||||| ||| || | ||| || ||| |||| | || || Sbjct 155795 TGTGTCTGATGGTAAGGTTGT--GAACAAGACATCCCAGAGAGTC-TGTTATAACGGCCA 155739 Query 7054 AGCAGGTGGTCTGGAAGGGCTGAGGCAGAAGGGGTGGAGCATCCTCAACCTGCTTCTGAT 7113 ||| || || |||||||| | | || ||||| ||||| | | || |||||| | | Sbjct 155738 AGCCGGGGGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCT 155679 Query 7114 CAGAAGGATCTCaaaaatccgaaatacaaaaataaaaatATTGGCGCAAGGGGACAATCA 7173 |||| ||| |||| | |||| |||| | | || | |||| ||||| || |||| Sbjct 155678 -AGAAA-ATCA-AAAAGTACGAA-TACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCA 155623 Query 7174 GGTCATCTGTACACAGTACAAGTTGCCATCA-ACCAGGAATGAGAAAGAGACTGTTGACG 7232 || || | ||||||||| ||| | ||| || | | || || || |||| ||| Sbjct 155622 AGTTATATATACACAGTATAAG----CCTCATACTACGGAT-AGTAA---ACTGAAGACT 155571 Query 7233 CC-ATAAAAGGCATGGTCCAG-AACAACAATGCCATCATGGAGTCTATAGAAGAAGGGAC 7290 | || ||| || || || ||||| | ||||||| | | | ||||| || || Sbjct 155570 CATATCCAAGAAATC-TCAAGGAACAATGAGAACATCATGAAAAATGTGGAAGATGGAAC 155512 Query 7291 CAAGA-AGTTGGGCTTGCTCATAAACCAAGATGAGACAGTCCAATGTGCAGACTACATGA 7349 | || || ||| | | |||| ||| | |||||||| | | | || || || ||| Sbjct 155511 -ACGAGAGCTGGCCCTTATCATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGA 155453 Query 7350 ATTATGGAAAGGTCCCAATCTTCAGAGGGAACATTAGAGGCCTGGAGACCAAGAGGTGGT 7409 |||||||||| || | || | || || ||| | | || ||||| |||||||| Sbjct 155452 ATTATGGAAAAACCCAGGTGTTTCGTGGAAATATTCGCGAACTAGAGACAAAGAGGTGAC 155393 Query 7410 CCAGGGTCACATGTGTTACCAACGATCAGCTCCCAACTTTTGCTAATGTGATGTCCTCCG 7469 ||||||| || |||| | || |||||| | ||| | | | ||| |||||||| ||| Sbjct 155392 CCAGGGTGACCTGTGCAGCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCG 155333 Query 7470 TCTCTACCAATGCTTTGACAGTGTC 7494 || | | |||||| || ||||| || Sbjct 155332 TCACAAGCAATGCCTTAACAGTTTC 155308 Score = 82.4 bits (90), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 7264 CATCATGGAGTCTATAGAAGAAGGGACCAAGA-AGTTGGGCTTGCTCATAAACCAAGATG 7322 ||||||| | | | ||||| || || | || || ||| | | |||| ||| | |||| Sbjct 154075 CATCATGAAAAATGTGGAAGATGGAAC-ACGAGAGCTGGCCCTTATCATTAACAATGATG 154017 Query 7323 AGACAGTCCAATGTGCAGACTACATGAATTATGGAAAGGTCCCAATCTTCAGAGGGAACA 7382 |||| | | | || || || ||||||||||||| || | || | || || | Sbjct 154016 AGACTATGTAGTCTGGTGATTATTTGAATTATGGAAAAACCCAGGTGTTTCGTGGAAATA 153957 Query 7383 TTAGAGGCCTGGAGACCAAGAGGTGGTCCAGGGTCACATGTGTTACCAACGATCAGCTCC 7442 || | | || ||||| |||||||| ||||||| || |||| | || |||||| | | Sbjct 153956 TTCGCGAACTAGAGACAAAGAGGTGACCCAGGGTGACCTGTGCAGCTAATGATCAGGTTC 153897 Query 7443 CAACTTTTGCTAATGTGATGTCCTCCGTCTCTACCAATGCTTTGACAGTGTC 7494 || | | | ||| |||||||| ||||| | | |||||| || ||||| || Sbjct 153896 CATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTAACAGTTTC 153845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36655620229120