Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028235.1 Length=12994 Score E Sequences producing significant alignments: (Bits) Value seq7137 82.4 6e-12 >seq7137 Length=338409 Score = 82.4 bits (90), Expect = 6e-12 Identities = 403/627 (64%), Gaps = 41/627 (7%) Strand=Plus/Minus Query 8518 ATATTTTTAAAGTTATGGGTCAATGTTTTGGTCTTCCCAATTTGTTTTTACGTTCTCATG 8577 || |||||||||| |||||||||| | ||| |||||| ||| |||| | |||||| Sbjct 155907 ATGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATG 155848 Query 8578 AATTTTTTCAAAAAAGCCTGATTTATTACAACCAACGACCTGATCTGATGATCCCCTTAG 8637 | || ||| | || ||||| ||||||| || | || | ||| ||||| | | Sbjct 155847 AGTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTG 155788 Query 8638 AAGACA-GGCTGGAATCTATTGATCCCAGTCAACTTGTTTGTTGGAATGGTCAAGCTGGA 8696 | | | || || | | | ||||||| | || |||| || || ||||| || Sbjct 155787 ATGGTAAGGTTGTGAACAAGACATCCCAGAGA----GTCTGTTATAACGGCCAAGCCGGG 155732 Query 8697 GGATTGGAAGGATTGAGGCAAAAGGGTTGGTCAATTGTAAATCTACTTGTTATAGAAAGA 8756 ||| ||||||| || | |||||||| ||| | | ||||| |||||| |||||| Sbjct 155731 GGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCTAGAAA-- 155674 Query 8757 GAATCCAAAATTAGGAATACGTTAGTCAAAATTTTGGCTCAAGGAGACAATCAGACCATC 8816 ||| |||| || |||||| ||| || ||||||||||||| |||| Sbjct 155673 --ATCAAAAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCA------- 155623 Query 8817 AGCACTTGT-TATG-AGATGGTAAGCACTTTTTCAATTGAGGAAGAGGATTTGGAAATTA 8874 | || | ||| | | ||||| || | | | || || | | | | | | Sbjct 155622 ---AGTTATATATACACAGTATAAGC-CTCATACTACGGAT--AGTAAACT-GAAGACTC 155570 Query 8875 ATA----AGATTGTTCAA--AACAATAATGCTGTCATGAAAGCAATTCGCAA--TGGGAC 8926 ||| ||| |||| |||||| | |||||||| ||| | || ||| || Sbjct 155569 ATATCCAAGAAATCTCAAGGAACAATGAGAACATCATGAAA--AATGTGGAAGATGGAAC 155512 Query 8927 TGAAAAACTAGGGTTGTTGATTAATGATGATGAAACTATG--GTCAGTGCCGATTATTTA 8984 | | || | | | ||||| ||||||| |||||| ||| || |||||||| Sbjct 155511 ACGAGAGCTGGCCCTTATCATTAACAATGATGAGACTATGTAGTC--TGGTGATTATTTG 155454 Query 8985 AATTATGGGAAAGTTCCTATATTTCGTGGAATTATTAGGGGATTAGACTACAAA-AGGTG 9043 |||||||| ||| | | |||||||||| |||| | | | |||| ||||| ||||| Sbjct 155453 AATTATGGAAAAACCCAGGTGTTTCGTGGAAATATTCGCGAACTAGAG-ACAAAGAGGTG 155395 Query 9044 GGCTAGAGTGAATTTTGGGAATAATGATCAGGTTCCATCACTAGGCTCTTTACTATCATC 9103 | || |||| | || |||||||||||||||||| |||| ||| | || | Sbjct 155394 ACCCAGGGTGACCTGTGCAGCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCAC 155335 Query 9104 TGTAGCCACAAATGCCTTGACAGTCTC 9130 || | | |||||||| ||||| || Sbjct 155334 CGTCACAAGCAATGCCTTAACAGTTTC 155308 Score = 78.8 bits (86), Expect = 8e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 8946 ATTAATGATGATGAAACTATG--GTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTA 9003 ||||| ||||||| |||||| ||| || |||||||| |||||||| ||| | Sbjct 154029 ATTAACAATGATGAGACTATGTAGTC--TGGTGATTATTTGAATTATGGAAAAACCCAGG 153972 Query 9004 TATTTCGTGGAATTATTAGGGGATTAGACTACAAA-AGGTGGGCTAGAGTGAATTTTGGG 9062 | |||||||||| |||| | | | |||| ||||| ||||| | || |||| | || Sbjct 153971 TGTTTCGTGGAAATATTCGCGAACTAGAG-ACAAAGAGGTGACCCAGGGTGACCTGTGCA 153913 Query 9063 AATAATGATCAGGTTCCATCACTAGGCTCTTTACTATCATCTGTAGCCACAAATGCCTTG 9122 |||||||||||||||||| |||| ||| | || | || | | |||||||| Sbjct 153912 GCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTA 153853 Query 9123 ACAGTCTC 9130 ||||| || Sbjct 153852 ACAGTTTC 153845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41461550884160