Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30]
8,680 sequences; 232,923,092 total letters
Query= NC_028235.1
Length=12994
Score E
Sequences producing significant alignments: (Bits) Value
seq7137 82.4 6e-12
>seq7137
Length=338409
Score = 82.4 bits (90), Expect = 6e-12
Identities = 403/627 (64%), Gaps = 41/627 (7%)
Strand=Plus/Minus
Query 8518 ATATTTTTAAAGTTATGGGTCAATGTTTTGGTCTTCCCAATTTGTTTTTACGTTCTCATG 8577
|| |||||||||| |||||||||| | ||| |||||| ||| |||| | ||||||
Sbjct 155907 ATGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATG 155848
Query 8578 AATTTTTTCAAAAAAGCCTGATTTATTACAACCAACGACCTGATCTGATGATCCCCTTAG 8637
| || ||| | || ||||| ||||||| || | || | ||| ||||| | |
Sbjct 155847 AGTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTG 155788
Query 8638 AAGACA-GGCTGGAATCTATTGATCCCAGTCAACTTGTTTGTTGGAATGGTCAAGCTGGA 8696
| | | || || | | | ||||||| | || |||| || || ||||| ||
Sbjct 155787 ATGGTAAGGTTGTGAACAAGACATCCCAGAGA----GTCTGTTATAACGGCCAAGCCGGG 155732
Query 8697 GGATTGGAAGGATTGAGGCAAAAGGGTTGGTCAATTGTAAATCTACTTGTTATAGAAAGA 8756
||| ||||||| || | |||||||| ||| | | ||||| |||||| ||||||
Sbjct 155731 GGACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTGTTCTAGAAA-- 155674
Query 8757 GAATCCAAAATTAGGAATACGTTAGTCAAAATTTTGGCTCAAGGAGACAATCAGACCATC 8816
||| |||| || |||||| ||| || ||||||||||||| ||||
Sbjct 155673 --ATCAAAAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCA------- 155623
Query 8817 AGCACTTGT-TATG-AGATGGTAAGCACTTTTTCAATTGAGGAAGAGGATTTGGAAATTA 8874
| || | ||| | | ||||| || | | | || || | | | | | |
Sbjct 155622 ---AGTTATATATACACAGTATAAGC-CTCATACTACGGAT--AGTAAACT-GAAGACTC 155570
Query 8875 ATA----AGATTGTTCAA--AACAATAATGCTGTCATGAAAGCAATTCGCAA--TGGGAC 8926
||| ||| |||| |||||| | |||||||| ||| | || ||| ||
Sbjct 155569 ATATCCAAGAAATCTCAAGGAACAATGAGAACATCATGAAA--AATGTGGAAGATGGAAC 155512
Query 8927 TGAAAAACTAGGGTTGTTGATTAATGATGATGAAACTATG--GTCAGTGCCGATTATTTA 8984
| | || | | | ||||| ||||||| |||||| ||| || ||||||||
Sbjct 155511 ACGAGAGCTGGCCCTTATCATTAACAATGATGAGACTATGTAGTC--TGGTGATTATTTG 155454
Query 8985 AATTATGGGAAAGTTCCTATATTTCGTGGAATTATTAGGGGATTAGACTACAAA-AGGTG 9043
|||||||| ||| | | |||||||||| |||| | | | |||| ||||| |||||
Sbjct 155453 AATTATGGAAAAACCCAGGTGTTTCGTGGAAATATTCGCGAACTAGAG-ACAAAGAGGTG 155395
Query 9044 GGCTAGAGTGAATTTTGGGAATAATGATCAGGTTCCATCACTAGGCTCTTTACTATCATC 9103
| || |||| | || |||||||||||||||||| |||| ||| | || |
Sbjct 155394 ACCCAGGGTGACCTGTGCAGCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCAC 155335
Query 9104 TGTAGCCACAAATGCCTTGACAGTCTC 9130
|| | | |||||||| ||||| ||
Sbjct 155334 CGTCACAAGCAATGCCTTAACAGTTTC 155308
Score = 78.8 bits (86), Expect = 8e-11
Identities = 133/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 8946 ATTAATGATGATGAAACTATG--GTCAGTGCCGATTATTTAAATTATGGGAAAGTTCCTA 9003
||||| ||||||| |||||| ||| || |||||||| |||||||| ||| |
Sbjct 154029 ATTAACAATGATGAGACTATGTAGTC--TGGTGATTATTTGAATTATGGAAAAACCCAGG 153972
Query 9004 TATTTCGTGGAATTATTAGGGGATTAGACTACAAA-AGGTGGGCTAGAGTGAATTTTGGG 9062
| |||||||||| |||| | | | |||| ||||| ||||| | || |||| | ||
Sbjct 153971 TGTTTCGTGGAAATATTCGCGAACTAGAG-ACAAAGAGGTGACCCAGGGTGACCTGTGCA 153913
Query 9063 AATAATGATCAGGTTCCATCACTAGGCTCTTTACTATCATCTGTAGCCACAAATGCCTTG 9122
|||||||||||||||||| |||| ||| | || | || | | ||||||||
Sbjct 153912 GCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAGCAATGCCTTA 153853
Query 9123 ACAGTCTC 9130
||||| ||
Sbjct 153852 ACAGTTTC 153845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 41461550884160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |