Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq7137 89.7 5e-14 >seq7137 Length=338409 Score = 89.7 bits (98), Expect = 5e-14 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 9924 TGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAGGACCCATGA 9983 ||| || | ||| |||||||||||| |||| ||||| || ||||| | || || ||||| Sbjct 155906 TGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGA 155847 Query 9984 GTTTTTTCAGAAAAGTTTAATTTATTATAATCAAAGACCTGATTTGATG 10032 ||| ||| |||| || | ||||||| |||| | ||| | ||||||||| Sbjct 155846 GTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATG 155798 Score = 86.0 bits (94), Expect = 6e-13 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 9916 AACGGTCCTGTATTCAGAGTAATGGGTCAATTCTTGGGATATCCTAATTTGATACTCAGG 9975 || |||||||| || | ||| |||||||||||| |||| ||||| || ||||| | || Sbjct 154235 AATGGTCCTGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGA 154176 Query 9976 ACCCATGAGTTTTTTCAGAAAAGTTTAATTTATTATAATCAAAGA 10020 || |||||||| ||| |||| || | ||||||| |||| | ||| Sbjct 154175 ACTCATGAGTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGA 154131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46206562128440