Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20suzukii_20[refseq_20GCF_5F000472105.1_202013-09-30] 8,680 sequences; 232,923,092 total letters Query= NC_031278.1 Length=12247 Score E Sequences producing significant alignments: (Bits) Value seq7137 116 3e-22 >seq7137 Length=338409 Score = 116 bits (128), Expect = 3e-22 Identities = 405/619 (65%), Gaps = 25/619 (4%) Strand=Plus/Minus Query 7592 TGTATTCACAGTCATGGGCAAATTCCTCGGATATCCGAATTTAATTGCGAGAACTCATGA 7651 ||| || | ||||||||| ||||||| || ||||| || || ||| |||||||||||| Sbjct 155906 TGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCATGA 155847 Query 7652 GTTCTTCGAGAAAAGCTTCATTTACCACGGCGGTAGAGCAGACTTAATGAAGATCTCCAA 7711 |||||| ||||| ||| ||||||| | ||||||||| || ||| | || | Sbjct 155846 GTTCTTTGAGAATAGCCTCATTTATTCTAATGATAGAGCAGATTTGATGGCTGTGTCTGA 155787 Query 7712 CGGCAACATAGTTAACAAG-GATCCCAGTAAGATGGTATGCTGGCAGGGCCAGAAGGGCG 7770 || || | || |||||| ||||||| ||| || || | | ||||| || | Sbjct 155786 TGGTAAGGTTGTGAACAAGACATCCCAG--AGA--GTCTGTTATAACGGCCAAGCCGGGG 155731 Query 7771 GATTGGAAGGACTTCGACAAAAGGGGTGGAGCATATTGAATCTATTAGTCATTCGAAGGG 7830 || ||||||| | || |||||||| ||||| | |||||| | | ||| || Sbjct 155730 GACTGGAAGGTTTACGCCAAAAGGGATGGAGTACCGCGAATCTGCTTG---TTC-TAGAA 155675 Query 7831 AAGGACAAGACCGGAACACCCGAATCCGATGCTTAGCTCAAGGAGATAATCAGGTTATCT 7890 || | || ||| || ||| | | |||||||||||| |||| ||||| | Sbjct 155674 AATCAAAAAGTACGAATACAGAGGTCCAAGCAGTGGCTCAAGGAGATGATCAAGTTATAT 155615 Query 7891 GTACACAATATAAACTTCAAAAATTTCGAACTGAAGAGGAGCTGAAAACCAACATAACCA 7950 |||||| ||||| | || | | | || | | | | ||||| || |||| ||| Sbjct 155614 ATACACAGTATAAGCCTC--ATACTACGGATAGTA----AACTGAAGAC--TCATATCCA 155563 Query 7951 --ACATCGTTGCCAATAATCAATACATTTTAAAGAGAATCGAAGATGGAACAAAGAAAAT 8008 | ||| || ||| | |||| | || | | |||||||||||| | | Sbjct 155562 AGAAATCTCAAGGAACAATGAGAACATCATGAAAAATGTGGAAGATGGAACACGAGAGCT 155503 Query 8009 CGGTCTCATGATAAACCAAGATGAGACCATGCAGAGTGCGGACTATTTAAACTACGGGAA 8068 | || || || ||| | |||||||| ||| || || || ||||| || || || || Sbjct 155502 GGCCCTTATCATTAACAATGATGAGACTATGTAGTCTGGTGATTATTTGAATTATGGAAA 155443 Query 8069 AATTCCCA--TATTCCGGGGGAATATGAG-GAACTTGGAGACAAAGCGATGGGCCCGTGT 8125 || |||| | || || || ||||| | |||| | ||||||||| | || || | || Sbjct 155442 AA--CCCAGGTGTTTCGTGGAAATATTCGCGAAC-TAGAGACAAAGAGGTGACCCAGGGT 155386 Query 8126 TACCTGTGTCACAAATGATCAAGTACCCACTCTAGCAAATACCATGTCTACTGTATCCAC 8185 ||||||| | |||||||| || || | ||| ||| ||||| || || | | Sbjct 155385 GACCTGTGCAGCTAATGATCAGGTTCCATCCATAGGGAATTTGATGTCCACCGTCACAAG 155326 Query 8186 AAATGCATTGACCGTTGCT 8204 ||||| || || ||| || Sbjct 155325 CAATGCCTTAACAGTTTCT 155307 Score = 87.8 bits (96), Expect = 1e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 7590 CCTGTATTCACAGTCATGGGCAAATTCCTCGGATATCCGAATTTAATTGCGAGAACTCAT 7649 ||||| || | ||||||||| ||||||| || ||||| || || ||| |||||||||| Sbjct 154229 CCTGTTTTTAAAGTCATGGGTCAATTCCTGGGTTATCCCAACTTGATTTTGAGAACTCAT 154170 Query 7650 GAGTTCTTCGAGAAAAGCTTCATTTA 7675 |||||||| ||||| ||| ||||||| Sbjct 154169 GAGTTCTTTGAGAATAGCCTCATTTA 154144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39071384306720