Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_031216.1 Length=15462 Score E Sequences producing significant alignments: (Bits) Value seq3023 145 8e-31 >seq3023 Length=5802038 Score = 145 bits (160), Expect = 8e-31 Identities = 189/259 (73%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 9748 AAATTAATCGGACCCCCTCTAAAAAGAGAAGAAACATGGTCATCATCCAATCTATTCATA 9807 |||||||| || |||||| | || | |||||| |||||||| ||||| | ||||||| Sbjct 2852894 AAATTAATTGGTCCCCCTTTGAAGAAAGAAGAGACATGGTCTTCATCAGCTTTATTCATT 2852953 Query 9808 TATGGAAAAGTCATGTTTTTAAATGGATGTCCGCTAACAATGTCCCAAAAGAAAATCTGT 9867 |||||||| | || | | ||||| ||||| | ||||||| ||||| || || | | Sbjct 2852954 TATGGAAATTTTATTATCTATAATGGGTGTCCTTTGTCAATGTCTCAAAAAAAGATATTT 2853013 Query 9868 CGCATGTTTCCGATGAGCAATGAAGGATTTCCTACCATAGAAACGGCGATTTCCTCTCTA 9927 | ||||| | |||||||||||||||| ||||| | || ||||| ||||| ||| || Sbjct 2853014 AGATATTTTCCTACGAGCAATGAAGGATTTTCTACCGTTGAGACGGCAATTTCATCTATA 2853073 Query 9928 TCTGCCAACTGCTCGTCTTCTTGCTCTTCTGATATAAATCCGATTATTCCTTTTATCATG 9987 |||| |||||||| | |||| || | ||||| || || || || ||| | ||| Sbjct 2853074 GCTGCTAACTGCTCTGCAGCTTGTTCATAAGATATTTCCCCCATAATCCCATTT-TTATG 2853132 Query 9988 TA-CAGTCTCTGGTCCTCT 10005 || ||| | |||| |||| Sbjct 2853133 TAGTAGTTTTTGGTACTCT 2853151 Score = 118 bits (130), Expect = 1e-22 Identities = 367/558 (66%), Gaps = 20/558 (4%) Strand=Plus/Plus Query 10849 ATCACAGGTGTCACTGTCCCATATCCCATTGAAATCTTTTCTATAGAGGCAGGACTTGAT 10908 || || |||||||| || || || || |||||| | || ||||| ||| || Sbjct 2853944 ATAACTGGTGTCACAGTTCCCTACCCTATTGAATTTTTAAACATAGAACAAGGTTTTTTA 2854003 Query 10909 TGTCATCT-TCATTCAAATCCACAACATGGGTATATTCTCATGAAACAAACTGCT---TC 10964 || || | |||| |||| || | | || |||||||| |||||||| || | | Sbjct 2854004 TG-CACCAATCATACAAACCCTGATAAAGGCTATATTCTTATGAAACAGACCATTCAATA 2854062 Query 10965 TCCTCACAATCTTGATTGGTGGAAAGGTGACATCATTGGAGACGCTGTTCCATACTTAGG 11024 |||| | || ||||||| |||| || || || | ||| |||| || |||| Sbjct 2854063 TCCTTATAAC---GATTGGTTCAAAGCAGAACAAATAGGGGTCGCCATTCCTTATATAGG 2854119 Query 11025 ATCCAAAACCATGGACAAAGTAAAAACTTATGGAAAACAAATTGCAAAAAGTACAATTCC 11084 || | ||| || || || ||||| | || || || |||||||||||| || | | Sbjct 2854120 TTCAAGAACAATAGATAAGGTAAAGGCATACGGGAACAAAATTGCAAAAA---CATCTTC 2854176 Query 11085 TCTGTTACGGCAAA---CGTTGATTCTTCAATCATTGATAGGATGGGCAACTGAGCGCCA 11141 || ||| | ||| | | | | ||||| || || |||||||||||| | Sbjct 2854177 TCCTTTATTGAAAAAAGCATCCAAAATCCAATCTTTAATTGGATGGGCAACTTCTTTTGA 2854236 Query 11142 ATCCAATCTAGCCTCTTGTCTAG--AATTTATGTTGGCAGCAGTCACTGATTTGCCATCT 11199 || | || ||| ||| ||| | |||| | | || || |||||| | || | Sbjct 2854237 GTCAGAACTTGCCAAATGTATAGGGAGGTTATTCT--CTGCTGTAACTGATCTTCCCCCG 2854294 Query 11200 TCTCTGGTCAACCCCGGGGATTCAGAAATATCAGGATCAGTTGAACATAGATTAACTACC 11259 || || || | |||||| | |||||| || || |||||||||||||| | || Sbjct 2854295 GAACTCTAAAATCCAGAGGATTCCGCAATATCCGGGTCTGTTGAACATAGATTCGCATCC 2854354 Query 11260 ACTTCAATAGACAGAGGAGGCAAAGTTGAACTACTGTTTACATTTGCTACATATCTTA-C 11318 | | | | |||||||||| || |||||| | |||| | |||| |||| ||| | | Sbjct 2854355 AATGCGGTGAACAGAGGAGGAAATGTTGAATTGATGTTCAATTTTGGGACAT-TCTCATC 2854413 Query 11319 TCTATCCACTGACACATTGATATCTTATGCCAAGGGAACAGTAAATGTGAATCTTCATTT 11378 |||| | || || ||||| || | ||||| || || | |||||||| || |||||||| Sbjct 2854414 TCTAGCAACAGATACATTTATTGCATATGCAAAAGGGTCTGTAAATGTAAACCTTCATTT 2854473 Query 11379 TCAGGCATCATTGAGTTA 11396 |||||| | ||||||| Sbjct 2854474 CCAGGCAACTATGAGTTA 2854491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 49352278090750