Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_031216.1
Length=15462
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 145 8e-31
>seq3023
Length=5802038
Score = 145 bits (160), Expect = 8e-31
Identities = 189/259 (73%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 9748 AAATTAATCGGACCCCCTCTAAAAAGAGAAGAAACATGGTCATCATCCAATCTATTCATA 9807
|||||||| || |||||| | || | |||||| |||||||| ||||| | |||||||
Sbjct 2852894 AAATTAATTGGTCCCCCTTTGAAGAAAGAAGAGACATGGTCTTCATCAGCTTTATTCATT 2852953
Query 9808 TATGGAAAAGTCATGTTTTTAAATGGATGTCCGCTAACAATGTCCCAAAAGAAAATCTGT 9867
|||||||| | || | | ||||| ||||| | ||||||| ||||| || || | |
Sbjct 2852954 TATGGAAATTTTATTATCTATAATGGGTGTCCTTTGTCAATGTCTCAAAAAAAGATATTT 2853013
Query 9868 CGCATGTTTCCGATGAGCAATGAAGGATTTCCTACCATAGAAACGGCGATTTCCTCTCTA 9927
| ||||| | |||||||||||||||| ||||| | || ||||| ||||| ||| ||
Sbjct 2853014 AGATATTTTCCTACGAGCAATGAAGGATTTTCTACCGTTGAGACGGCAATTTCATCTATA 2853073
Query 9928 TCTGCCAACTGCTCGTCTTCTTGCTCTTCTGATATAAATCCGATTATTCCTTTTATCATG 9987
|||| |||||||| | |||| || | ||||| || || || || ||| | |||
Sbjct 2853074 GCTGCTAACTGCTCTGCAGCTTGTTCATAAGATATTTCCCCCATAATCCCATTT-TTATG 2853132
Query 9988 TA-CAGTCTCTGGTCCTCT 10005
|| ||| | |||| ||||
Sbjct 2853133 TAGTAGTTTTTGGTACTCT 2853151
Score = 118 bits (130), Expect = 1e-22
Identities = 367/558 (66%), Gaps = 20/558 (4%)
Strand=Plus/Plus
Query 10849 ATCACAGGTGTCACTGTCCCATATCCCATTGAAATCTTTTCTATAGAGGCAGGACTTGAT 10908
|| || |||||||| || || || || |||||| | || ||||| ||| ||
Sbjct 2853944 ATAACTGGTGTCACAGTTCCCTACCCTATTGAATTTTTAAACATAGAACAAGGTTTTTTA 2854003
Query 10909 TGTCATCT-TCATTCAAATCCACAACATGGGTATATTCTCATGAAACAAACTGCT---TC 10964
|| || | |||| |||| || | | || |||||||| |||||||| || | |
Sbjct 2854004 TG-CACCAATCATACAAACCCTGATAAAGGCTATATTCTTATGAAACAGACCATTCAATA 2854062
Query 10965 TCCTCACAATCTTGATTGGTGGAAAGGTGACATCATTGGAGACGCTGTTCCATACTTAGG 11024
|||| | || ||||||| |||| || || || | ||| |||| || ||||
Sbjct 2854063 TCCTTATAAC---GATTGGTTCAAAGCAGAACAAATAGGGGTCGCCATTCCTTATATAGG 2854119
Query 11025 ATCCAAAACCATGGACAAAGTAAAAACTTATGGAAAACAAATTGCAAAAAGTACAATTCC 11084
|| | ||| || || || ||||| | || || || |||||||||||| || | |
Sbjct 2854120 TTCAAGAACAATAGATAAGGTAAAGGCATACGGGAACAAAATTGCAAAAA---CATCTTC 2854176
Query 11085 TCTGTTACGGCAAA---CGTTGATTCTTCAATCATTGATAGGATGGGCAACTGAGCGCCA 11141
|| ||| | ||| | | | | ||||| || || |||||||||||| |
Sbjct 2854177 TCCTTTATTGAAAAAAGCATCCAAAATCCAATCTTTAATTGGATGGGCAACTTCTTTTGA 2854236
Query 11142 ATCCAATCTAGCCTCTTGTCTAG--AATTTATGTTGGCAGCAGTCACTGATTTGCCATCT 11199
|| | || ||| ||| ||| | |||| | | || || |||||| | || |
Sbjct 2854237 GTCAGAACTTGCCAAATGTATAGGGAGGTTATTCT--CTGCTGTAACTGATCTTCCCCCG 2854294
Query 11200 TCTCTGGTCAACCCCGGGGATTCAGAAATATCAGGATCAGTTGAACATAGATTAACTACC 11259
|| || || | |||||| | |||||| || || |||||||||||||| | ||
Sbjct 2854295 GAACTCTAAAATCCAGAGGATTCCGCAATATCCGGGTCTGTTGAACATAGATTCGCATCC 2854354
Query 11260 ACTTCAATAGACAGAGGAGGCAAAGTTGAACTACTGTTTACATTTGCTACATATCTTA-C 11318
| | | | |||||||||| || |||||| | |||| | |||| |||| ||| | |
Sbjct 2854355 AATGCGGTGAACAGAGGAGGAAATGTTGAATTGATGTTCAATTTTGGGACAT-TCTCATC 2854413
Query 11319 TCTATCCACTGACACATTGATATCTTATGCCAAGGGAACAGTAAATGTGAATCTTCATTT 11378
|||| | || || ||||| || | ||||| || || | |||||||| || ||||||||
Sbjct 2854414 TCTAGCAACAGATACATTTATTGCATATGCAAAAGGGTCTGTAAATGTAAACCTTCATTT 2854473
Query 11379 TCAGGCATCATTGAGTTA 11396
|||||| | |||||||
Sbjct 2854474 CCAGGCAACTATGAGTTA 2854491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 49352278090750
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |