Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_031283.1 Length=14731 Score E Sequences producing significant alignments: (Bits) Value seq3023 80.6 3e-11 >seq3023 Length=5802038 Score = 80.6 bits (88), Expect = 3e-11 Identities = 136/197 (69%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 9991 TTGGCCCTCCTCTCAAGAAAGAGGAAACCTGGGTATCCACCTCCCTCTTCATTTATGGAA 10050 |||| || ||| | |||||||| || || ||| || | | | ||||||||||||| Sbjct 2852901 TTGGTCCCCCTTTGAAGAAAGAAGAGACATGGTCTTCATCAGCTTTATTCATTTATGGAA 2852960 Query 10051 AATTTATAATCCTCAACGGATGCCCTCGCTCTATGTCCCAAAAGAAAATGTGCAGGATGT 10110 | ||||| ||| || || || ||| || ||||| ||||| || || | || | Sbjct 2852961 ATTTTATTATCTATAATGGGTGTCCTTTGTCAATGTCTCAAAAAAAGATATTTAGATATT 2853020 Query 10111 TCCCTATGAGCAATGAGGGATTTCCAACAACAGAAACCGCATTGTCCTCTGTAGTTGCAA 10170 | |||| ||||||||| |||||| | || || || ||| | || ||| ||| ||| | Sbjct 2853021 TTCCTACGAGCAATGAAGGATTTTCTACCGTTGAGACGGCAATTTCATCTATAGCTGCTA 2853080 Query 10171 ACGGATCCGCTGCCTGT 10187 || | || || || ||| Sbjct 2853081 ACTGCTCTGCAGCTTGT 2853097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47013444036660