Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_013955.1 Length=15764 Score E Sequences producing significant alignments: (Bits) Value seq76293 93.3 4e-15 >seq76293 Length=3964 Score = 93.3 bits (102), Expect = 4e-15 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 10993 ATTGGACTCAAAGCAAAAGAAAGAGAAGTAAAGTTAGTTGGAAGGtttttttCTTTAATG 11052 |||||||| |||| |||||| |||| || ||| ||| ||||| | ||||||||||||| Sbjct 2983 ATTGGACTAAAAGGCAAAGAACGAGAGGTGAAGATAGAAGGAAGATATTTTTCTTTAATG 3042 Query 11053 ACATGGGAACTCAGAGAATATTTCGTATGTACAGAGTATATGATCAAACAGTTCTTCATT 11112 | ||||| || ||||| |||||| || || || ||| |||||| | | || | Sbjct 3043 TCCTGGGATCTAAGAGATTATTTCATAATAACCGAATATTCAATCAAA-ACTCATTTTGT 3101 Query 11113 CCCCTGTTTCAA-GGCCTGACTATGGCTGATGA 11144 |||| ||||| || | |||||||||||||| Sbjct 3102 TCCCTTATTCAACGGATTAACTATGGCTGATGA 3134 Score = 78.8 bits (86), Expect = 9e-11 Identities = 124/172 (72%), Gaps = 7/172 (4%) Strand=Plus/Plus Query 11220 TGCCAATCATTTTGATTATGAAAAATGGAATAATCATCAAAGATATGCTTCAA-AT-TGC 11277 ||| |||||| | |||||| |||||||||| || || ||| | |||| || ||| Sbjct 3252 TGCTAATCATATAGATTATCAAAAATGGAACAACCACCAACGTCTCAAGTCAACATATGC 3311 Query 11278 CATGTGTTTAAAGTCATGGGACAATGTTTTGGTTTACCCA-ATCTGTTCCTGCGTACACA 11336 || | |||| || |||||||||| | | | ||||| | | ||| | |||||||| Sbjct 3312 AATTT--TTAAGGTTATGGGACAAT--TCTCGGTTACCAAGAACTGATTACACGTACACA 3367 Query 11337 TGAATTCTTTGAGAAAAGCTTGATCTATTATGCCAATAGACCAGATTTGATG 11388 ||| |||||||| ||||||| ||| || ||||| |||| |||| | ||| Sbjct 3368 TGAGTTCTTTGAAAAAAGCTGGATATACTATGCAGATAGGGGAGATCTAATG 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50245489271646