Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq76293 100 2e-17 >seq76293 Length=3964 Score = 100 bits (110), Expect = 2e-17 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6299 TTGGTGATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCA 6358 ||||| || ||| ||||||| |||||| |||| ||||||| | ||| |||| ||| || Sbjct 2977 TTGGTCATTGGACTAAAAGGCAAAGAACGAGAGGTGAAGATAGAAGGAAGATATTTTTCT 3036 Query 6359 TTGATGTCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCAAGACTCAC 6418 || ||||| ||| | || || || || || | | || || |||| ||||| ||||| Sbjct 3037 TTAATGTCCTGGGATCTAAGAGATTATTTCATAATAACCGAATATTCAATCAAAACTCAT 3096 Query 6419 TTTGTGCCATTGTTCCATGGGCTGACCATGGCTGATGA 6456 ||||| || || ||| | || | || ||||||||||| Sbjct 3097 TTTGTTCCCTTATTCAACGGATTAACTATGGCTGATGA 3134 Score = 78.8 bits (86), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 13/157 (8%) Strand=Plus/Plus Query 6529 TATTGCAAATCATATTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGG 6588 || ||| |||||||| || ||| |||||||||| || || ||||| | || | | Sbjct 3249 TACTGCTAATCATATAGATTATCAAAAATGGAACAACCACCAACG-----TCTCAAGTCA 3303 Query 6589 ACCTGTG-----TTTAAAGTCATGGGACAATTCTTGGGTTATCCAAATTTGATATAC-CG 6642 || | || ||||| || ||||||||||||| || ||| | | | |||| ||| || Sbjct 3304 ACATATGCAATTTTTAAGGTTATGGGACAATTCTCGG-TTACCAAGAACTGAT-TACACG 3361 Query 6643 GACACATGAGTTTTTTGAGAAAAGTTTAATTTACTAT 6679 ||||||||||| ||||| ||||| | || |||||| Sbjct 3362 TACACATGAGTTCTTTGAAAAAAGCTGGATATACTAT 3398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35413317308896