Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq76293 100 2e-17 >seq76293 Length=3964 Score = 100 bits (110), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 6202 TTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTCTTCTCA 6261 ||| | |||||| |||| || |||||| |||| |||| |||| || |||| || || Sbjct 2977 TTGGTCATTGGACTAAAAGGCAAAGAACGAGAGGTGAAGATAGAAGGAAGATATTTTTCT 3036 Query 6262 TTGATGTCATGGAGAT-TAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAAACATA 6320 || ||||| ||| ||| |||| || ||||| | || || || || | ||||||||| | Sbjct 3037 TTAATGTCCTGG-GATCTAAGAGATTATTTCATAATAACCGAATATTCAATCAAAACTCA 3095 Query 6321 CTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGA 6359 | |||||||| || || || ||||||||||| ||||| Sbjct 3096 TTTTGTTCCCTTATTCAACGGATTAACTATGGCTGATGA 3134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35422902291928