Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutreta_20diana_20[genbank_20GCA_5F001015115.1_202015-05-29] 139,046 sequences; 233,053,157 total letters Query= NC_031302.1 Length=11370 Score E Sequences producing significant alignments: (Bits) Value seq76293 86.0 5e-13 >seq76293 Length=3964 Score = 86.0 bits (94), Expect = 5e-13 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6433 TAAAAGAAAAGGAGCGCGAACTGAAAATTGGAGGCAGATTCTTTGCCTTGATGTCCTGGG 6492 |||||| || || || || |||| || | ||| |||| ||| | || |||||||||| Sbjct 2990 TAAAAGGCAAAGAACGAGAGGTGAAGATAGAAGGAAGATATTTTTCTTTAATGTCCTGGG 3049 Query 6493 AAATAAGGGATTATTTTGTAATGACTGAGTACTTGATTAAAACACACTTTGTTCCTCTAT 6552 | |||| |||||||| |||| || || || | || ||||| || |||||||| ||| Sbjct 3050 ATCTAAGAGATTATTTCATAATAACCGAATATTCAATCAAAACTCATTTTGTTCCCTTAT 3109 Query 6553 TTGATGGACTCACAATGGCAGATGA 6577 | | ||| | || ||||| ||||| Sbjct 3110 TCAACGGATTAACTATGGCTGATGA 3134 Score = 82.4 bits (90), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 6653 TGCTGATCATATTGATTATGAAAAATGGAATAATCACCAAAGAGCAGAGGGAAACA-ACC 6711 |||| ||||||| |||||| |||||||||| || |||||| | | | | |||| | Sbjct 3252 TGCTAATCATATAGATTATCAAAAATGGAACAACCACCAACGT-CTCAAGTCAACATATG 3310 Query 6712 CTACCTTCAGGGTTATGGGTCAATTTTTAGGGTACCCAAATTTGATTGAAAGAACACATG 6771 | | || | ||||||||| ||||| | || |||| | | ||||| | | ||||||| Sbjct 3311 CAATTTTTAAGGTTATGGGACAATTCTC-GGTTACCAAGAACTGATTACACGTACACATG 3369 Query 6772 AAATCTTTGAAAAATCTTGGATATACTAT 6800 | ||||||||||| |||||||||||| Sbjct 3370 AGTTCTTTGAAAAAAGCTGGATATACTAT 3398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36212065894896