Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_031088.1 Length=12930 Score E Sequences producing significant alignments: (Bits) Value seq3668 316 2e-82 seq473 167 2e-37 seq6089 125 6e-25 >seq3668 Length=48228 Score = 316 bits (350), Expect = 2e-82 Identities = 550/797 (69%), Gaps = 2/797 (0%) Strand=Plus/Minus Query 217 GATGAGGGGAGAACCTTTGCTAGAGTCATAATACCAGTATTTAACTTTGATGACATGGAT 276 ||||| |||||||| ||||||||| | || || | || |||||| | || ||||| Sbjct 35931 GATGAAGGGAGAACATTTGCTAGAACATTTATTCCCATTTTCAACTTTAACGATATGGAC 35872 Query 277 CAAGCAGTCACTCAACTCTGTCTTGGAACACTATTTCATGTGATAACAAAAACCATAGGA 336 |||| || || || || || | |||||| | ||||| ||| | ||||| || || Sbjct 35871 CAAGATGTAACCCATCTGTGCTTAGGAACATTGTTTCAAGTGTTGACAAAGACTGCCGGC 35812 Query 337 TTGAGTAGTGGGATATTATTTGGATCATTTCTTTCGATAGTAAGATGTCTATCTGGAACC 396 | | || || ||| | |||||| | ||||| || || |||||||| |||| || Sbjct 35811 CTCACCAGCGGCATACTGTTTGGAGCGTTTCTCTCAATTATAAGATGTTTATCCGGGGGG 35752 Query 397 ATGTATGAGGATATTAAAGACACTCTGCCTACAGTGGGTTTTATAAGTATAGTAGAACCA 456 |||| || || ||| |||| | | || |||||||| ||| | |||||||| Sbjct 35751 ATGTTCACTGACTTTGAAGCTGCTCTACAATCTGTAGGTTTTATTAGTGTGGTAGAACCT 35692 Query 457 ACATTTGATGAATTTGCAACTATGACTGAACTAACTCCAGAGGACATACTAGATTTAGTA 516 ||||||| ||| ||||| ||| | | | |||||||||| | |||| | | Sbjct 35691 ACATTTGCTGAGTTTGCTGAAATGGCAAACATTGCTCCAGAGGATGTGGTAGAATATGGG 35632 Query 517 GTGAATAGAGAAGAGTTAGGGATTATAACTGGTATTTACCTAAATTTGATAGGCAAGTCT 576 |||| | ||||| || | || || || || || || || ||| | || || || || Sbjct 35631 TTGAACCGGGAAGAACTAAGCATCATCACAGGGATCTATCTCAATCTCATTGGTAAATCA 35572 Query 577 TTCACTACAGCTAATCATAAACCATGGTTCGACAAAAGGATTGAGGCATATTGCAATGCA 636 || ||| | ||||| |||| ||| ||||| || || || || || |||||||| ||||| Sbjct 35571 TTTACTGCTGCTAACCATAGACCTTGGTTTGAGAAGAGAATAGAAGCATATTGTAATGCC 35512 Query 637 TTGGGAAATAGCCTATCTGCGAACAAATTGAAGCAATTGATACCTAGGATGGATACATGT 696 ||||||| || |||| ||| ||||| ||| | | || ||||||||||| || || Sbjct 35511 ATGGGAAACAGTAGGTCTGTGAATAAATTAAAGGCACTAATCCCTAGGATGGAGACCTGC 35452 Query 697 GAAACCATTAAAGGCACTATATGTAGATCGTTTGATTTCAGGAGACAACTCTTCTTAGCT 756 || | || ||||||| ||||||||||| || || || || ||| ||| || | || Sbjct 35451 GACATGATCAAAGGCATGATATGTAGATCATTCGACTTTAGAAGAGCACTATTTCTGGCC 35392 Query 757 ATGGAAAAGAAAGCTGGAGAT-ATAGAGGATGCTGTAGTAAGTCAATCATTCTCCATCAC 815 ||||| || || ||| ||| | || ||| ||| || ||||| | ||||| || Sbjct 35391 ATGGAGCGCAAGTCTAAGGATGATA-ATGACACTGGAGTCAGCCAATCCCTATCCATAAC 35333 Query 816 TATGAACCTACTGAGAGGAGTAGATATGGCCATGGTGAGGTTATGCCTAGATGTACTAGG 875 ||||| || | | ||| || |||||||| ||||| || | || || || || | || Sbjct 35332 GATGAATCTTTTAAAAGGGGTTGATATGGCTATGGTTAGACTGTGTCTCGACGTGATGGG 35273 Query 876 CAATTGTAATGAATTCACTGCAACATGGAATGAAGTGGCCAGACACAATGCTGTATTAAA 935 || ||||| || || || || || ||||| ||||| || | || ||||| || || || Sbjct 35272 TAACTGTAACGAGTTTACAGCCACCTGGAACGAAGTTGCTCGCCATAATGCCGTTTTGAA 35213 Query 936 CATGGCTTTCGAACAATTGAATCAGTTTAAAGATCAAAGAGAATACGATTATTGTAAAAT 995 ||||| ||||||||||| ||||| | ||||| | || || ||||| ||||| || Sbjct 35212 TCGAGCTTTTGAACAATTGAACCAGTTCAGTAATCAACGGGAGTATGATTACTGTAAGAT 35153 Query 996 CTTGTTCAGATCTGATC 1012 ||||| ||||||| Sbjct 35152 ATTGTTTCACTCTGATC 35136 >seq473 Length=534531 Score = 167 bits (184), Expect = 2e-37 Identities = 268/383 (70%), Gaps = 8/383 (2%) Strand=Plus/Minus Query 254 TATTTAACTTTGATGACATGGATCAAGCAGTCACTCAACTCTGTCTTGGAACACTATTTC 313 |||| || |||||| | ||| |||| |||||| ||| | ||||||||||| ||||| | Sbjct 491067 TATTCAATTTTGATAATATGACACAAGAAGTCACCCAATTGTGTCTTGGAACGCTATTCC 491008 Query 314 ATGTGATAACAAAAACCATAGGATTGAGTAGTGGGATATTATTTGGATCATTTCTTTCGA 373 | | |||| ||||| || || |||||| || |||||||| |||||||||| | Sbjct 491007 AAGCATTAACTAAAACAGCTGGTTTAGCTAGTGGTATTTTATTTGGGTCATTTCTTTTTA 490948 Query 374 TAGTAAGATGTCTATCTGGAACCATGTATGAGGATATTAAAGACACTCTGCCTACAGTGG 433 | || |||| |||| | |||| || ||| || ||| || | |||| ||| Sbjct 490947 TCATACGATGCTTATCAGAGGGGATGTTTGGTGATTTTGAAG---CT-TCCCTAAAGTCA 490892 Query 434 GTTT----TATAAGTATAGTAGAACCAACATTTGATGAATTTGCAACTATGACTGAACTA 489 ||| ||| || || |||| | || |||| |||||||| ||||| | | Sbjct 490891 GTTGCTCATATCAGAGTAATAGAGCTTACTTTTGGGGAATTTGCCCAGATGACAGGCATT 490832 Query 490 ACTCCAGAGGACATACTAGATTTAGTAGTGAATAGAGAAGAGTTAGGGATTATAACTGGT 549 | || || || | |||| | | |||||||||| || ||| | || || |||| Sbjct 490831 GCACCTGAAGATGTTATAGAATACGACCTGAATAGAGAGGAATTAAGTATCATTGCTGGC 490772 Query 550 ATTTACCTAAATTTGATAGGCAAGTCTTTCACTACAGCTAATCATAAACCATGGTTCGAC 609 ||||| || ||||| ||||| ||||| ||||| |||| ||||||| ||||||||| || Sbjct 490771 ATTTATCTGAATTTAATAGGGAAGTCCTTCACAGCAGCAAATCATAGACCATGGTTTGAA 490712 Query 610 AAAAGGATTGAGGCATATTGCAA 632 ||||||||||| || || ||||| Sbjct 490711 AAAAGGATTGAAGCCTACTGCAA 490689 >seq6089 Length=8707 Score = 125 bits (138), Expect = 6e-25 Identities = 289/429 (67%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 574 TCTTTCACTACAGCTAATCATAAACCATGGTTCGACAAAAGGATTGAGGCATATTGCAAT 633 |||||||| | | ||||| ||||| |||| || | ||| || |||| || ||| Sbjct 5322 TCTTTCACCCCGGACAATCACAAACCCTGGTGGGAGCGCCGCATTAAGTCATACTGTAAT 5263 Query 634 GCATTGGGAA---ATAGCCTATCTGCGAACAAATTGAAGCAATTGATACCTAGGATGGAT 690 |||| ||| | || || || ||||||| | || ||| | ||||| || || || Sbjct 5262 ACATTAGGAGCACAAAG---ATTTGTGAACAAACTCAAACAACTTATACCAAGAATTGAA 5206 Query 691 ACATGTGAAACCATTAAAGGCACTATATGTAGATCGTTTGATTTCAGGAGACAACTCTTC 750 | ||||| ||| | ||| | | || || |||||||| ||||| || | |||| | ||| Sbjct 5205 AACTGTGATACCCTAAAAAGTATGATCTGCAGATCGTTCGATTTTAGAAAACAATTATTC 5146 Query 751 TTAGCTATGGAAAAGAAAGCTGGAGAT-ATAGAGGATGCTGTAGTAAGTCAATCATTCTC 809 || | ||| || | |||| | ||||| || || || ||| | | ||| ||| ||| Sbjct 5145 TTGGTTATAGAGCAAAAAGTTAGAGATGATTCAG-ATTCTG--GCATGTC--TCAGACTC 5091 Query 810 C----ATCACTATGAACCTACTGAGAGGAGTAGATATGGCCATGGTGAGGTTATGCCTAG 865 || || ||||| || | ||||| || ||||| ||||| | | || || Sbjct 5090 TTAGTATAACCATGAATTTATTACAGGGAGTGGACATGGCGATGGTAAAACTTTGTCTTT 5031 Query 866 ATGTACTAGGCAATTGTAATGAATTCACTGCAACATGGAATGAAGTGGCCAGACACAATG 925 ||| | || || || |||||||||||| | | ||||||||||| || | || |||| Sbjct 5030 CTGTCATGGGGAACTGCAATGAATTCACTTCCTCGTGGAATGAAGTCGCTCGGCATAATG 4971 Query 926 CTGTATTAAACATGGCTTTCGAACAATTGAATCAGTTTAAAGATCAAAGAGAATACGATT 985 | ||| | || | ||| || |||||| || || || | || ||| | ||||| || | Sbjct 4970 CCGTACTTAATAGGGCATTTGAACAAATGGCCCAATTCTATGAGCAACGTGAATATGACT 4911 Query 986 ATTGTAAAA 994 ||| ||||| Sbjct 4910 ATTCTAAAA 4902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41251396096344