Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gerris_20buenoi_20[genbank_20GCA_5F001010745.1_202015-05-21] 20,259 sequences; 1,000,161,732 total letters Query= NC_031142.1 Length=4193 Score E Sequences producing significant alignments: (Bits) Value seq2013 212 2e-51 seq3071 89.7 1e-14 >seq2013 Length=124027 Score = 212 bits (234), Expect = 2e-51 Identities = 782/1202 (65%), Gaps = 36/1202 (3%) Strand=Plus/Plus Query 1944 TGTGATTTCAATTGCTTTCATGTTAATAATGAATGCCAATGTGAAGA-TAGGAGAGTGCA 2002 |||||| ||||||||||| || ||| |||| || | ||| |||| | |||| | Sbjct 30748 TGTGATCTCAATTGCTTTAGAGTCAATGATGATTGTCTGTGTAAAGACTCAGAGA-TAAG 30806 Query 2003 CAGGTTCAAAAGAGATCTAAGTAGCAACAATTTGGGTCATTATCCAATTGTTAGTCCAAA 2062 |||||||| ||||| | | | | ||| |||| ||||||| | || Sbjct 30807 GAGGTTCAAGAGAGACTTGACACCGAGGCAGTTGAAGCATTTTCCAATTAAAAACTTGAA 30866 Query 2063 AGGATTCATCAATTATAATTCTACATATCAACCTACTTCTGATGATGAAACTATACAGCT 2122 ||| || || ||| ||||| || | | || ||| ||||| ||||| ||| | || Sbjct 30867 AGGTTTTATTCATTTCAATTCGACTTTTTCTCCCACTGAAGATGAAGAAACGATAGA-CT 30925 Query 2123 TACCT-TCAACACCATAACAAAGACACCTACAACTAGTGTTGTCAGTGGTGAGTCCATCT 2181 || || | |||| || || ||||| || || | | | | | | ||| || || |||| Sbjct 30926 TAACTATGAACATAATTACTAAGACTCCAACTAGCAATATCATAAATGGAGATTCAATCT 30985 Query 2182 ACAGGATGCCATTTCAAAATAATGAAGGAATTAGTTTCAGGATT---AGCACTGATGAGG 2238 ||| || || ||| | ||||||||| || |||| || |||||||| | | Sbjct 30986 TCAGAATACCTTTTTTGAGCAATGAAGGAGTTGTCTTCAAACTTGGAAGCACTGACG--G 31043 Query 2239 ATTTT---GAAGTTAAGACTATATCAGTCAGTTTACATGATGCGTTTCAGGTCTACAAAT 2295 |||| || || || || | || | || | |||||||| |||| || ||||||| Sbjct 31044 ATTTGAGAGACGT--AG-CT-TCTCGATTAGCTATCATGATGCACTTCAAGTGTACAAAT 31099 Query 2296 CTAAGTTTGTGAAGTGGGTTAGTGATAGAACTCTAAAGATCTCTGAAGAATTTGGATGTA 2355 |||| ||| | | ||| | | ||||| | |||||| |||||| |||||||| | Sbjct 31100 CTAAATTTATTAGATGGATAACAAATAGAGACATTAAGATCAATGAAGAGTTTGGATGCA 31159 Query 2356 CTGGGAGCTGTGATGATTTGTGCAAATGTGAAATTAGCACATGTAAGGTTGCAAAGTGGC 2415 |||| | ||| ||||||| || || ||| | | | ||||| || ||| ||| Sbjct 31160 CTGGTACTTGTAATGATTTATGTAACTGTAACTCAAAAATTTGTAAAGTAAGAAAATGGA 31219 Query 2416 AGGATGATAGGGGTTGGGGCTGCAATCCTTCTTGGTGTTGGTCAATCAGTGATGGATGCA 2475 | || || ||||||||||| ||||| |||||| ||||| | | |||||| |||| Sbjct 31220 GCAACGACAGAGGTTGGGGCTGTAATCCGAGTTGGTGCTGGTCTGTTAATGATGGCTGCA 31279 Query 2476 CTTGCTGTAAAGCTTCTGCTTTAGAAAATTTTTCTTCTGGACTGCTAGGAATTTGGGAAG 2535 | || |||| | ||| |||| ||||| |||| | ||||| | ||||||| Sbjct 31280 CCTGTTGTACCATTATTGCAAAAGAAGATTTTAGCCATGGAATAATAGGATTATGGGAAG 31339 Query 2536 TTGAGTTATCTTACTTTGGGTTAACTCTGTGTTTAAGCGATTCTATGCTTAGCTATAAGT 2595 |||| | || || || | | | ||| | | ||| || ||| | | Sbjct 31340 TTGAACTGAGCACCTATGAATTCATTTTATGTATCACAGATAATACAGAAGAATATGATT 31399 Query 2596 GTAAATACTTAGAAGGTCCAGGAACTTTC--TTAA--TAGGCAAGTACGAACTATCTATA 2651 |||| ||| | || || ||||| ||| |||| || || || ||| | ||||| Sbjct 31400 GTAAGTACATGGATGGGCCAGG----TTCAATTAATGTAAATAACTATGAAGTCTCTATT 31455 Query 2652 GGGAACCCAACTGGGAACATCAAGAAAGTCAGTAAGTTCATAGCTACAAAACACAATGTT 2711 |||||||||||||| || || |||||||||| |||| | ||||| || ||||| | | Sbjct 31456 GGGAACCCAACTGGCAATATAAAGAAAGTCACTAAGCTGATAGCAACCAAACATATAATA 31515 Query 2712 GGACAGACTCATTCCAACATTGATCAAATTGTAGAAATCTATTCT-GATCCAAACATCTG 2770 || | | || |||||||| | || ||| | ||| |||| | || |||||||| || Sbjct 31516 GGTGATATCCACTCCAACATAGGCCAGATT-TCGAATATTATTGTAGACCCAAACATATG 31574 Query 2771 TTATCAGGAACACTGCACTCATGGGGAGATTGGTGATTATTCATTTAGATCAATAGAAGA 2830 | | | ||||||||||| ||||| || ||||| || |||||||| | | ||||| || Sbjct 31575 TGAGCCTGAACACTGCACACATGGAGAAATTGGAGACTATTCATTCACAAACATAGATGA 31634 Query 2831 TATTTCAACTTATGCAGATAAAAAGCCAA-CAACCTATATGGTGTGGAAGACAACATCAT 2889 || |||| ||| | | |||| || | || |||| ||||| | ||| Sbjct 31635 GATATCAA-TTAAGTCTAGTGAAAGAAAATCTACAGTTATGAACTGGAAATCTACAAATC 31693 Query 2890 TATCAAGGCAATGTTCCTTTGGCAATTATCCTAAATGTTACAGTGATGACATGGTTTCAT 2949 || || || || | ||| | | || || ||||| || | || | ||| | | | Sbjct 31694 TAGATAGACAGTGCTATTTTAGTAGCTACCCAAAATGCTATGGAGA--AAATGTTGTGAA 31751 Query 2950 CA--CTCTCAGATAAGTTTGATTATTTCTATAAAAATAAACAAATACTTAAAAATGATTT 3007 | || ||| | ||||| |||||| | || |||| | ||| || | || || Sbjct 31752 TAACCTGGGAGACCAATTTGACCATTTCTTCAGAACAAAACGACAACTCAATGAAGACTT 31811 Query 3008 TCGCATTGTCACCTCAACACTTAACCAGGA--CAGATCAGGGAACCCTTCATTAGTATTA 3065 || |||||||| | | | || ||| ||||| || || |||||| || || Sbjct 31812 CAAAATAATCACCTCAGAATTAACCCTGGATGATGATCA--TAATCCATCATTAATACTA 31869 Query 3066 AAGGTCCAACCCAAGATGAATTATGGATATATAGAAGGTCTAATAAAGGTTAGAGGACTG 3125 || || || || ||| || |||||||||| ||||| || |||||||||| || || Sbjct 31870 AAAGTGCAGCCTAAGTCAAACTATGGATATAGTGAAGGATTACTAAAGGTTAGGGGTCTA 31929 Query 3126 GA 3127 || Sbjct 31930 GA 31931 Score = 123 bits (136), Expect = 7e-25 Identities = 255/375 (68%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 2168 TGGTGAGTCCATCTACAGGATGCCATTTCAAAATAATGAAGGAATTAGTTTCAGGATT-- 2225 ||| || || |||| ||| || || ||| | ||||||||| | |||| || Sbjct 33228 TGGAGATTCAATCTTCAGAATACCTTTTTTGAGCAATGAAGGAGTGGTCTTCAAACTTGG 33287 Query 2226 -AGCACTGATGAGGATTTTGAAGTTAAGACTATATCAGTCAGTTTACATGATGCGTTTCA 2284 |||||||||| || || ||| || || | ||| | || | ||||||||| |||| Sbjct 33288 AAGCACTGATG-GGTTTGAGAAACGTAG-CT-TCTCAATTAGCTATCATGATGCGCTTCA 33344 Query 2285 GGTCTACAAATCTAAGTTTGTGAAGTGGGTTAGTGATAGAACTCTAAAGATCTCTGAAGA 2344 ||| ||||||||||| ||||| | ||| | | ||||| | |||||| |||||| Sbjct 33345 GGTATACAAATCTAAATTTGTTAGATGGATAACAAATAGAGACATTAAGATCAATGAAGA 33404 Query 2345 ATTTGGATGTACTGGGAGCTGTGATGATTTGTGCAAATGTGAAATTAGCACATGTAAGGT 2404 |||||||| ||||| | ||| ||||| | || || ||| | | | ||||| || Sbjct 33405 GTTTGGATGCACTGGTACTTGTAATGATCTATGTAACTGTAACTCCAAAATTTGTAAAGT 33464 Query 2405 TGCAAAGTGGCAGGATGATAGGGGTTGGGGCTGCAATCCTTCTTGGTGTTGGTCAATCAG 2464 ||| ||| | || || || ||||| || ||||| |||||| |||||| | | Sbjct 33465 AAGAAAATGGAGCAACGACAGAGGCTGGGGTTGTAATCCGAGTTGGTGCTGGTCAGTTAA 33524 Query 2465 TGATGGATGCACTTGCTGTAAAGCTTCTGCTTTAGAAAATTTTTCTTCTGGACTGCTAGG 2524 |||||| ||||| || |||| | ||| |||| ||||| | |||| | |||| Sbjct 33525 TGATGGCTGCACCTGTTGTACCATTGTTGCAAAAGAAGATTTTAGTCATGGAATAATAGG 33584 Query 2525 AATTTGGGAAGTTGA 2539 | | ||||||||||| Sbjct 33585 ATTATGGGAAGTTGA 33599 >seq3071 Length=81424 Score = 89.7 bits (98), Expect = 1e-14 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2338 CTGAAGAATTTGGATGTACTGGGAGCTGTGATGATTTGTGCAAATGTGAAATTAGCACAT 2397 |||| |||||||| | ||||| ||| |||||| || || ||| | | | || | Sbjct 4598 CTGAGGAATTTGGCAGAACTGGAGACTGCAGTGATTTATGTAATTGTAATTTAAACATCT 4657 Query 2398 GTAAGGTTGCAAAGTGGCAGGATGATAGGGGTTGGGGCTGCAATCCTTCTTGGTGTTGGT 2457 |||| || | |||||| | |||||||| ||||||||||| ||||| |||||||| |||| Sbjct 4658 GTAAAGTCTCTAAGTGGGAAGATGATAGAGGTTGGGGCTGTAATCCATCTTGGTGCTGGT 4717 Query 2458 CAATCAGTGATGGATGCACTTG 2479 |||| | |||| || | ||| Sbjct 4718 CAATTAACAATGGTTGTAGTTG 4739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13302651707730