Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicoverpa_20armigera_20[genbank_20GCA_5F002156985.1_202017-05-22] 997 sequences; 337,072,206 total letters Query= NC_028241.1 Length=14478 Score E Sequences producing significant alignments: (Bits) Value seq260 87.8 2e-13 >seq260 Length=366442 Score = 87.8 bits (96), Expect = 2e-13 Identities = 199/293 (68%), Gaps = 11/293 (4%) Strand=Plus/Minus Query 11524 AAAGGACCATACAGCCCTTACCTAGGGAGTAGGACATTGGAAAGCACCAGCATATTGCAG 11583 || ||||| |||| | ||||| ||| || ||| |||||| || | |||| | Sbjct 308387 AAGGGACCTTACAAGGCATACCTCGGGTCTAAAACAAAGGAAAGTACATCTCTCTTGCGG 308328 Query 11584 CCTTGGGAGAAGGAAACTAGAATCCCTGTAATCAAAAGAGCAGCGGATCTAAGGAAAGCC 11643 |||||||| || || | | |||||| | |||| |||||||||||| || | ||||| | Sbjct 308327 CCTTGGGAAAATGAGAGCAAGATCCCTCTCATCAGAAGAGCAGCGGACCTGA-GAAAGGC 308269 Query 11644 ATATC--TTGGTTCATTGATGAGGATTCAAATTTAGCTAAATCTATTTACAATAATCTGT 11701 || || ||||||||| || | |||| || |||| |||| || | ||||||| Sbjct 308268 AT-TCGGATGGTTCATTAATCAACATTCGAACTTAGGCCAATCCATATTGTCGAATCTGT 308210 Query 11702 CAG-CACTAACCGGTGAAACTTGGG---ATGAGCGGATAGAAGGATTTAAAAGAACAGGA 11757 | | || || ||||| | |||| |||| | | ||| | | |||| ||||| Sbjct 308209 ATGCCCCTCACAGGTGAGAGATGGGAAAATGACCAGCCAGAGAAAGT---AAGATCAGGA 308153 Query 11758 AGTCCCCTCCATAGATTCACATGTTCAAGGGTGAGTGCAGGTGGGTACACTGC 11810 | |||||||||| |||| |||||| || ||| ||| || |||| ||| Sbjct 308152 TCTACCCTCCATAGGTTCAGTTGTTCACGGCAAAGTCAAGGGGGCTACATTGC 308100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46210667285951