Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_001560.1 Length=11161 Score E Sequences producing significant alignments: (Bits) Value seq17807 120 2e-23 >seq17807 Length=6784 Score = 120 bits (132), Expect = 2e-23 Identities = 408/624 (65%), Gaps = 29/624 (5%) Strand=Plus/Minus Query 6293 GATGATCTAATTATTGGTCTTAAAGGAAAGGAGAGGGAACTGAAGTTGGCAGGTAGATTT 6352 || || |||||||| || || |||||||||||| ||||| | ||| || || ||||| Sbjct 5428 GACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTC 5369 Query 6353 TTCTCCCTAATGTCTTGGAAATTGCGAGAATACTTTGTAATTACCGAATATTTGAT-AAA 6411 || || | ||||| ||||| | || | || || |||| || | | || |||| || Sbjct 5368 TTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAG 5309 Query 6412 GACTCATTTCGTCCCTATGTTTAAAGGCCTGACAATGGCGGACGATCTAACTGCAGTCAT 6471 || | || || || |||| || || ||||||||||| ||||| || ||| | Sbjct 5308 GAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTAC 5249 Query 6472 TAAAAAGATGTTAGATTCCTCATCCGGCCAAGGATTGAAGTCA-TATGAGGCAATTTGCA 6530 |||||| | ||||| ||| |||||| | | | | |||||| | |||| || Sbjct 5248 GAAAAAGCTTCTAGATAACTCTGTGAACCAAGG-TCGGTCTGACTATGAGTCCATTTCCA 5190 Query 6531 TAGCCAATCACATTGATTACGAAAAATGGAATAACCACCAAAG-GAAGTTATCAAACGGC 6589 | ||||| ||| | ||||| ||||| |||||||| || || | | | | | || | | Sbjct 5189 TCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGC-AATGAC 5131 Query 6590 CCAGTGTTCCGAGTTATGGGCCAGTTCTTAGGTTATCCATCCTTAA-----TCGAGAGAA 6644 | || ||| ||| ||||| |||||| ||| | ||| ||| | | ||| Sbjct 5130 ACCGTATTCAAAGTGATGGGACAGTTCCTAG-----ACCTCCCTAATGTCTTTGTTCGAA 5076 Query 6645 CTCATGAATTTTTTGAGAAAAGTCTTATATACTACAATGG---AAGACCAGACTTGATG- 6700 | || | ||||| |||| ||||| || ||| |||| |||||||| | ||| Sbjct 5075 CACACAAGTTTTTCCAGAACAGTCTCAT---CTATTATGGGCCTCGACCAGACCTAATGG 5019 Query 6701 -CGTGTTCACAACAACACACTGATCAATTCAACCTCCCAACGAGTTTGTTGGCAAGGACA 6759 ||| || | | | | || | || | | | ||| |||||| |||| || Sbjct 5018 AAGTGATCGGAGATTCCCTCAGAAGTAAAGAAGCGTTC--CTAGTCTGTTGGGAAGGTCA 4961 Query 6760 AGAGGGTGGACTGGAAGGTCTACGGCAAAAAGGATGGACTATCCTCAATCTACT--GGTT 6817 ||| || || || || || || || || ||||||| ||| | ||||| || ||| Sbjct 4960 GCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTT 4901 Query 6818 ATTCAAAGAGAGGCTAAAATCAGAAACACTGCTGTCAAAGTCTTGGCACAAGGTGATAAT 6877 ||| |||||||| || | |||||||||| || || | |||| || || || ||| Sbjct 4900 ATT--GAGAGAGGCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAAT 4843 Query 6878 CAAGTTATTTGCACACAGTATAAA 6901 || || || |||| ||||||| Sbjct 4842 CAGGTAATCTGCAACTCGTATAAA 4819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35518091342000