Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_002526.1 Length=14900 Score E Sequences producing significant alignments: (Bits) Value seq17807 87.8 2e-13 seq12203 87.8 2e-13 seq186615 84.2 2e-12 seq66067 82.4 7e-12 >seq17807 Length=6784 Score = 87.8 bits (96), Expect = 2e-13 Identities = 196/293 (67%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 10238 GAATATGAATACATCACAATTGCCAATAATATTGATTATGAAAAATGGAATAACTATCAA 10297 || ||||| | ||| | || ||||| | | ||||||||||| |||||||| |||| Sbjct 5208 GACTATGAGTCCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAG 5149 Query 10298 AGAATTGAATCCAATGGGCCGGTGTTCACTGTGATGGGACGATTTTTAGGCTTGCCTAAT 10357 | ||| ||||| | || |||| |||||||||| || ||| | | |||||| Sbjct 5148 CGCGCTGAGAGCAATGACACCGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAAT 5089 Query 10358 TTGTTTACTAGAACTCATGAGTTTTTCCAAAAGAGTTTGATCTATTACAACCAAAGACCA 10417 | ||| | |||| || |||||||||| || ||| | |||||||| | ||||| Sbjct 5088 GTCTTTGTTCGAACACACAAGTTTTTCCAGAACAGTCTCATCTATTATGGGCCTCGACCA 5029 Query 10418 GACCTCATGATGGTGAGAGGACGGGAATGTCTGAACAGATTGGGAG---TGAAAGTGTGT 10474 ||||| ||| |||| ||| || | || | || | || | ||| ||| Sbjct 5028 GACCTAATGGAAGTGATCGGA---GATTCCCTCAGAAGTAAAGAAGCGTTCCTAGTCTGT 4972 Query 10475 TGGGAAGGACAAAAGGGAGGATTAGAAGGTTTGAGACAAAAGGGATGGAGCAT 10527 |||||||| || |||||| | || || | | || |||||||||||||| Sbjct 4971 TGGGAAGGTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCAT 4919 >seq12203 Length=1511 Score = 87.8 bits (96), Expect = 2e-13 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 10253 ACAATTGCCAATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCAAT 10312 || || ||||| |||||||||||||||||||||| ||| | |||||| || || | Sbjct 1304 ACCATCGCCAACCATATTGATTATGAAAAATGGAACAACCAACAAAGAGGAGACGCCGAC 1245 Query 10313 GGGCCGGTGTTCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTACTAGAACT 10372 | ||||||||||||||||| | || || || ||| || ||||||| ||||| Sbjct 1244 AACTCTGTGTTCACTGTGATGGGGCAATACTTGGGTCCGCCAAACTTGTTTAACCGAACT 1185 Query 10373 CATGAGTTTTT 10383 || |||||||| Sbjct 1184 CACGAGTTTTT 1174 >seq186615 Length=1208 Score = 84.2 bits (92), Expect = 2e-12 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 10140 aaTACTTTGTGCCATTATTTGAAGGATTGACAATGGCTGATGACCTAAATACTGTTATCa 10199 ||| || ||| || |||||| ||| | || ||||| || ||| ||| | || | | Sbjct 95 AATTCTATGTACCCCTATTTGGAGGTCTCACCATGGCAGACGACTTAACCAAAGTCACAA 154 Query 10200 aaaaaaTGTTAGATGTCTCTAGTGGTCAGGGAACAAGGGAATATGAATACATCACAATTG 10259 ||| |||| || || || || ||| || || || ||| | || || | Sbjct 155 AAAGGCTGTTGGACAATTCATTGGGACAAGGACAAAACGATTACCAATCTGTTACCATCG 214 Query 10260 CCAATAATATTGATTATGAAAAATGGAATAACTATCAAAGAATTGAATCCAATGGGCCGG 10319 |||| | | ||||||||||||||||| ||| | |||| | || || | || | Sbjct 215 CCAACCACAACGATTATGAAAAATGGAACAACCACCAAAAAGGAGACGCCGACAACCCTG 274 Query 10320 TGTTCACTGTGATGGGACGATTTTTAGGCTTGCCTAATTTGTTTAC 10365 |||||||||||||||||||||| || || ||||| || |||||||| Sbjct 275 TGTTCACTGTGATGGGACGATTCTTGGGTTTGCCAAACTTGTTTAC 320 >seq66067 Length=1491 Score = 82.4 bits (90), Expect = 7e-12 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 10031 ATTGGACTAAAGGCTAAGGAAAGAGAGCTTAAAGAAGAAGGGAGGtttttttCATTAATG 10090 |||||||| |||| || ||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 1045 ATTGGACTTAAGGGCAAAGAATGAGAGATTAAAAAGGAGGGAAGGTTCTTCTCATTGATG 1104 Query 10091 TCTTATGAATTAAGGGATTATTTTGTCTCAACGGAGTACTTAATaaaaaaaTACTTTGTG 10150 |||| || | || | || || || | || ||| | | || | | | | || ||| Sbjct 1105 TCTTGGAAAATGAGACAATACTTCGTGACCACCGAGCATATGATCAGAGAGTTCTATGTC 1164 Query 10151 CCATTATTTGAAGGATTGACAATGGCTGATGACCT 10185 ||||| ||| || | ||||||||||||| ||||| Sbjct 1165 CCATTGTTTTCAGAAATGACAATGGCTGACGACCT 1199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47449130311604