Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_002803.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq17807 140 2e-29 seq66067 80.6 2e-11 seq70391 78.8 7e-11 >seq17807 Length=6784 Score = 140 bits (154), Expect = 2e-29 Identities = 599/924 (65%), Gaps = 31/924 (3%) Strand=Plus/Minus Query 6201 GGATTACCCAGAGATAATCTCATCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATT 6260 || ||| | ||||| | || || || || ||||||| || || | || ||||| Sbjct 5440 GGTTTATCAAGAGACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAG 5381 Query 6261 GCGGGGAGATTCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAG 6320 | ||| |||||||| || ||||||||||| | | | |||| || |||| || | Sbjct 5380 GAGGGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCA 5321 Query 6321 TATCTGATCAAG-ACACATTATGTTCCGCTCTTCAAGGGATTAACGATGGCCGACGATCT 6379 ||||||||||| | |||||| || || ||| || | || ||||| || ||||| Sbjct 5320 CATCTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCT 5261 Query 6380 AACCTCTGTGGTAAAGAAGATGTTAGATAACACTAATGGGCAAGGCTTGGAC-GACTACT 6438 ||| || || ||| | |||||||| || ||||| | || | ||||| Sbjct 5260 CACCAAAGTTACGAAAAAGCTTCTAGATAACTCTGTGAACCAAGG-TCGGTCTGACTATG 5202 Query 6439 CATCTATATGCATTGCGAACCACATTGATTATGAAAAATGGAACAATCATCAACGGAAAG 6498 || || | ||| || |||||| | ||||||||||| ||||| |||||||| || | Sbjct 5201 AGTCCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTG 5142 Query 6499 AATCCAATGGGCCTGTATTTCGAGTCATGGGTCAATTCTTAGGATACCCTCGACTGTTTG 6558 | ||||| | ||||| ||| ||||| || ||| ||| |||| | |||| Sbjct 5141 AGAGCAATGACACCGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTG 5082 Query 6559 AAAGGACACATGAATTCTTTGAGTCAAGTCTCATTTATTATAACGGGA---GGCCGGACC 6615 | ||||| | || || || |||||||| |||||| ||| | || |||| Sbjct 5081 TTCGAACACACAAGTTTTTCCAGAACAGTCTCATCTATTAT---GGGCCTCGACCAGACC 5025 Query 6616 TGATGGATGTGAGAGGGGATTCTTTAGTGAATACAACAGATAAGATAGTCTGCTGGGAAG 6675 | ||||| |||| || ||||| | | || | || ||||||| ||||||| Sbjct 5024 TAATGGAAGTGATCGGAGATTCCCTCAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAG 4965 Query 6676 GGCAAGCAGGCGGATTAGAAGGGCTTTCG-CAGAAAGGATGGAGTGTACTCAATTTACTG 6734 | || || || | || |||| | || ||||| |||||||| | | ||| | || Sbjct 4964 GTCAGCTGGGAGGGCTTGA-GGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTA 4906 Query 6735 GTCATCAATCGAGAATCATCTATCAGAAACACAGTTGTAAAGGTGCTGGCTCAGGGGGAC 6794 || | |||| | | ||||||||| | || ||| ||||| ||||| ||| Sbjct 4905 GTGTTATTGAGAGAGGCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGAC 4846 Query 6795 AATCAGGTGATCTGCACGCAGTATAAA-ACCAAAAATTACAAAAATGAGGATGAGTTAAA 6853 |||||||| ||||||| ||||||| || |||| | | || | | |||| | || Sbjct 4845 AATCAGGTAATCTGCAACTCGTATAAACTCCCGAAATCA-ACAACCCAAGCTGAGCTGAA 4787 Query 6854 AATGCTCCTGACAGCGA--TGGTAGAGAACAATCAGACGATCATGAATGGGATCA-TAAC 6910 | |||| | ||| || | |||||| | | ||||| |||| | || || | Sbjct 4786 A--GCTCGAATCGACGAAGTGATGCAGAACA---ACTCCATCAT-CATGGAAGCAGTAGC 4733 Query 6911 ---AGGGACAGGAAAATTGGGATTAATCATTAACAATGATGAGACCATGCAATCGGCGGA 6967 || | || |||| | ||| | || || || | ||||| || |||||| | || Sbjct 4732 TCGCGGTATAGAAAAACTTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGA 4673 Query 6968 -TTACTTAAATTACGGTAAAGTGCCTGTTTTTCGAGG-AATAT-TAAGGGGGTTGGAAAC 7024 || ||| | ||||| ||||| || |||| |||| ||||| | | |||| | Sbjct 4672 CTTTCTTTCA-TACGGCAAAGTTCCCGTTTACAGAGGTAATATCTTA--CCTCTGGAGGC 4616 Query 7025 CAAACGATGGTCTAGAGTCACCTGCATCACCAATGATCAGATTCCAACTCTTGCAGGTGT 7084 |||||| ||||| || ||||| || |||| || || ||||| ||| || | || || Sbjct 4615 CAAACGCTGGTCAAGGGTCACGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGT 4556 Query 7085 GATGTCTTCTGTTTCTACCAATGC 7108 |||||| | | |||| ||||| Sbjct 4555 GATGTCAACGACTGCTACAAATGC 4532 >seq66067 Length=1491 Score = 80.6 bits (88), Expect = 2e-11 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 6219 CTCATCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGATTCTTCTCT 6278 |||||||||||| | || || |||||| ||||| |||| | | ||| || |||||||| Sbjct 1039 CTCATCATTGGACTTAAGGGCAAAGAATGAGAGATTAAAAAGGAGGGAAGGTTCTTCTCA 1098 Query 6279 CTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCA 6330 ||||||| ||| || |||| | ||||| || | || ||| || |||||| Sbjct 1099 TTGATGTCTTGGAAAATGAGACAATACTTCGTGACCACCGAGCATATGATCA 1150 >seq70391 Length=2338 Score = 78.8 bits (86), Expect = 7e-11 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 6211 GAGATAATCTCATCATTGGATTGAAAGGGAAAGAAAGAGAGCTTAAGATTGCGGGGAGAT 6270 || || | |||||||| || | ||||| |||||| | || ||||| | || || | Sbjct 1823 GAAATGACCTCATCATCGGTCTCAAAGGCAAAGAACGCGAAATTAAGTAAGAAGGAAGGT 1882 Query 6271 TCTTCTCTCTGATGTCATGGCAATTGAGGGAGTACTTTGTAATTACAGAGTATCTGATCA 6330 |||| || ||||||||||| | ||||| |||||||||| | || || | ||||||| Sbjct 1883 TCTTTTCCTTGATGTCATGGAAGATGAGGCAGTACTTTGTCACAACTGAACACCTGATCA 1942 Query 6331 AGACACATTATGTTCCGCTCTTCAAGGGATT 6361 | | |||||| || || ||| |||| || Sbjct 1943 AAGAATTTTATGTCCCACTGTTCTAGGGGTT 1973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35064736827792