Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_008514.1 Length=11545 Score E Sequences producing significant alignments: (Bits) Value seq17807 82.4 6e-12 >seq17807 Length=6784 Score = 82.4 bits (90), Expect = 6e-12 Identities = 398/620 (64%), Gaps = 41/620 (7%) Strand=Plus/Minus Query 6694 AGAAGATCTGGTTATCGGATTGAAAGGGAAAGAAAGAGAATTAAAGAAAGCAGGACGTTT 6753 ||| || || ||||||| ||||||| || || | ||| | ||| | | || | || Sbjct 5429 AGACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATT 5370 Query 6754 CTTCTCCCTTATGTCATGGAAATTACGAGAGTATTTCGTCATGACAGAATATCTGATCAA 6813 ||| || | ||||||||||| | || |||||||||| | || | | |||||||||| Sbjct 5369 CTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAA 5310 Query 6814 ACACCACTT-TGTCCCACTATTTCATGGATTGACTATGGCGGATGACATGACTCAAGTTA 6872 | || ||| ||||| || || | || ||||||||||| | || |||||| Sbjct 5309 GGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTA 5250 Query 6873 TGAAGAAAATGTTAGACAGAA--GTCAAGGGCAAGGAGAGAATGACTACCAGAGAGTCAG 6930 ||| || | |||| | || || ||||| | |||||| ||||| Sbjct 5249 CGAAAAAGCTTCTAGATAACTCTGTGAAC--CAAGGTCGGTCTGACTAT----GAGTCCA 5196 Query 6931 T----ATTGCAAACCATATTGACTATGAAAAGTGGAACAATCACCAAAG----GAGAGAA 6982 | || || ||||| | || |||||||||||||| ||||| || | ||||| | Sbjct 5195 TTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCA 5136 Query 6983 TCAAATGGACCAACGT-TTCGC-GTGATGGGACAATTCTTGGGCTATCCA----TCTTTG 7036 ||| || ||| ||| ||||||||||| ||| | | | || |||||| Sbjct 5135 ----ATGA--CACCGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTG 5082 Query 7037 ATCGAAAAGACGCATGAGTTCTTCGAGAAAAGCCCGATATACTACAATGGCA--GGCCGG 7094 ||||| | || |||| ||| |||| || | || || || ||| | || | Sbjct 5081 TTCGAACACACA----AGTTTTTCCAGAACAGTCTCATCTATTATG--GGCCTCGACCAG 5028 Query 7095 ATTTAATGCAAGTAACTGGAAA--CCAGGTGATCAACTCCACTGATAAACTTGTTTGCTG 7152 | ||||| |||| | ||| | || || | | | | || || || || Sbjct 5027 ACCTAATGGAAGTGATCGGAGATTCCCTCAGAAGTAAAGAAGCGTTC--CTAGTCTGTTG 4970 Query 7153 GCAGGGACAAAAGGGAGGGCTAGAGGGACTAAGACAGAAAGGATGGAGCATTTTGAATCT 7212 | | || || ||||||||| ||||| || | ||||| ||||||||||| ||||||| Sbjct 4969 GGAAGGTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCT 4910 Query 7213 GTTAATCATCAGGAGAGAGTCTAAAATCCGGAACACTCGAGTCCAGACTCTGGCGCAAGG 7272 || | | ||||||| | || | | | |||||| || |||| ||||| || || Sbjct 4909 CCTAGTGTTATTGAGAGAGGCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGG 4850 Query 7273 AGACAATCAAGTCATTTGCA 7292 |||||||| || || |||| Sbjct 4849 CGACAATCAGGTAATCTGCA 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36744064112816