Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_011639.1 Length=13196 Score E Sequences producing significant alignments: (Bits) Value seq36615 96.9 3e-16 seq12203 87.8 2e-13 seq17807 78.8 8e-11 >seq36615 Length=1239 Score = 96.9 bits (106), Expect = 3e-16 Identities = 296/450 (66%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 8457 AATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTACCTTATTAAGGAATATTT 8516 |||||||||| | ||| |||| |||||| || | || | || ||||| || Sbjct 94 AATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTA 153 Query 8517 TGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCT-ACAATCTGTTATAAAGAAGA 8575 ||||| |||||| || || || ||||| |||||||| |||| || | ||||| Sbjct 154 CGTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAA-GTGACCAAGAAAC 212 Query 8576 TGTTAGAAAATTC--TCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAATAGCAAA 8633 | | || || || |||| ||| || |||||| | |||| |||| || Sbjct 213 TCCTCGACAACTCGATCAA--CCAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAA 270 Query 8634 TCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTATGTTTT 8693 ||| |||| || || |||||||| ||||| ||||| ||| ||||| | ||| || Sbjct 271 CCATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTT 330 Query 8694 CAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGAATTCTT 8753 || | || || || ||| ||||| ||||| | ||| |||| || | | |||||| Sbjct 331 CACCATCATTGGGAAGGTTTTTGGTCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTT 390 Query 8754 TGAACAAAGTTTGATTTATTATCCTCAAAGAGCTGATTTGATGCACGTTGAAGGCGATAC 8813 || ||||| | | |||||| || || | ||| ||||| | |||| || ||| | Sbjct 391 CCAAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTC 450 Query 8814 ACT----AACAAACTCGTCCGCATCACTGGTGTGTTGGAATGGACAAAAAGGGGGTTTAG 8869 | | |||||| | || | ||||||||||| | ||||| || || || | Sbjct 451 AGTGTGCAACAAAGGC-TC----TTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGG 505 Query 8870 AAGGATTAAGACAAAAAGGATGGTCAGTAT 8899 ||||| | ||||| || || ||| ||||| Sbjct 506 AAGGACTGAGACAGAAGGGTTGG--AGTAT 533 >seq12203 Length=1511 Score = 87.8 bits (96), Expect = 2e-13 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 8568 AAAGAAGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGTATGTTTCAAT 8627 ||| ||| |||| || ||||| || ||||| || ||||| | | |||| | || Sbjct 1359 AAAAAAGCTGTTGGACAATTCATTGGGACAAGGGCAAAACGATTACCAATCTGTTACCAT 1300 Query 8628 AGCAAATCATATTGATTATGAAAAATGGAATAATCACCAAAGGAAAGAATCAAATTATTA 8687 || || ||||||||||||||||||||||| || || ||||| ||| | | | | Sbjct 1299 CGCCAACCATATTGATTATGAAAAATGGAACAACCAACAAAGAGGAGACGCCGACAACTC 1240 Query 8688 TGTTTTCAAAGTAATGGGCCAGTGTTTCGGTCTTCCAAACTTATTTACACGAACACATGA 8747 ||| |||| || ||||| || | || |||| |||||||| |||| ||||| || || Sbjct 1239 TGTGTTCACTGTGATGGGGCAATACTTGGGTCCGCCAAACTTGTTTAACCGAACTCACGA 1180 Query 8748 ATTCTT 8753 || || Sbjct 1179 GTTTTT 1174 >seq17807 Length=6784 Score = 78.8 bits (86), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 8440 GGAAGATTCTTCTCTTTAATGTCATGGGAACTCAGAGAGTATTTTGTTTTTACTGAGTAC 8499 || |||||||| || || ||||||||| | || | ||||||| || |||| | Sbjct 5377 GGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACAT 5318 Query 8500 CTTATTAAGGAATATTT-TGTTCCTCTATTCCATGGATTAACTATGGCTGATGATCT-AC 8557 || || ||||| | ||| ||| || || ||| || | || ||||| |||||||| || Sbjct 5317 CTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCAC 5258 Query 8558 AATCTGTTATAAAGAAGATGTTAGAAAATTCTCAAGGCCAAGGATCTAATGATTATGAGT 8617 | |||| || ||| | |||| || ||| |||||| ||| ||||||| Sbjct 5257 CAAA-GTTACGAAAAAGCTTCTAGATAACTCTGTGAACCAAGGTCGGTCTGACTATGAGT 5199 Query 8618 ATGTTTCAATAGCAAATCATATTGATTATGAAAAATGGAATAATCACCA 8666 |||| || || || || | ||||||||||| ||||||||||| || Sbjct 5198 CCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCA 5150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42009224636372