Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_020803.1 Length=11487 Score E Sequences producing significant alignments: (Bits) Value seq17807 154 1e-33 seq36615 152 4e-33 >seq17807 Length=6784 Score = 154 bits (170), Expect = 1e-33 Identities = 395/594 (66%), Gaps = 33/594 (6%) Strand=Plus/Minus Query 6652 AAAGGGAAAGAACGTGAATTAAAAAAGGCAGGACGGTTCTTCTCTCTGATGTCATGGGAA 6711 ||||| || || || ||| | || ||| || | ||||| || ||||||||||| | Sbjct 5407 AAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATGTCATGGAAC 5348 Query 6712 TTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAG-ACACACTATGTGCCCTTATT 6770 | | | ||||| |||| ||| | | | | |||||| | |||||||| | || Sbjct 5347 CTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGTGCCACTGTT 5288 Query 6771 CAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAAAATGCTAGAAAG--- 6827 | || | || ||||| |||||| | || ||||| || || | ||||| | Sbjct 5287 CTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCTAGATAACTC 5228 Query 6828 ---GAGTCAAGGGCAGGGAGAAGATGACTACGAGCACATCAGCATTGCCAACCACATTGA 6884 || ||||| | | |||||| ||| ||| ||| ||||||||| | || Sbjct 5227 TGTGAACCAAGGTCGGTC------TGACTATGAGTCCATTTCCATCGCCAACCACGTGGA 5174 Query 6885 CTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTGTTCAGAGTCAT 6944 ||||| |||||||||||||||||| | || |||| | || |||| ||| || Sbjct 5173 TTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAGTGAT 5114 Query 6945 GGGACAATTCCTAGGATATCCCAG-----TTTGATCGAAAAAACTCATGACTTTTTTCAA 6999 |||||| ||||||| | |||| |||| ||||| | || | ||||| || Sbjct 5113 GGGACAGTTCCTAG-ACCTCCCTAATGTCTTTGTTCGAACACACA----AGTTTTTCCAG 5059 Query 7000 GACAGCTTGATTTATTACAATGGGA---GACCAGACCTGATGGAAGTGAGGGG-GAATGA 7055 |||| | || ||||| |||| |||||||||| |||||||||| || || | Sbjct 5058 AACAGTCTCATCTATTA---TGGGCCTCGACCAGACCTAATGGAAGTGATCGGAGATTCC 5002 Query 7056 ATTATTGAACAAAACAGACAAGCTT-GTCTGTTGGGATGGTCAGGCTGGAGGACTGGAAG 7114 | | ||| ||| | | | | ||||||||||| |||||| ||||| || || | Sbjct 5001 CTCA--GAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAGG 4944 Query 7115 GACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAGAGAGAGTCCAAAA 7174 | || | || |||||||||||||| ||||||| || ||| | ||||||| |||| | Sbjct 4943 GCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAGA 4884 Query 7175 TCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAAGTTGTTTGCA 7228 ||||||||| ||| | || |||| ||||| |||||||| || | |||| Sbjct 4883 CCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCA 4830 >seq36615 Length=1239 Score = 152 bits (168), Expect = 4e-33 Identities = 356/525 (68%), Gaps = 13/525 (2%) Strand=Plus/Plus Query 6700 ATGTCATGGGAATTGAGAGAATATTTTGTAATAACAGAATACTTAATCAAGACACACTAT 6759 ||||||||| ||||| | || ||||| | |||| || |||| |||||| | || Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTAC 154 Query 6760 GTGCCCTTATTCAAAGGGTTAACCATGGCAGATGATATGACGGAAGTTGTAAAGAAAATG 6819 || ||| ||||| |||||| || ||||| |||||| | || |||| |||||| | Sbjct 155 GTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACTC 214 Query 6820 CTAGA-AAGGAG-TCAAGGGCAGGGAGAAGATGACTACGAGCACATCAGCATTGCCAACC 6877 || || || | |||| ||||| | | ||| ||| ||| | ||||||| Sbjct 215 CTCGACAACTCGATCAAC--CAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACC 272 Query 6878 ACATTGACTATGAGAAGTGGAATAATCATCAGAGAAAGGAATCAAATGGGCCTGTGTTCA 6937 | ||||||| ||||| ||||| |||||||| ||| |||| |||||| ||||| |||| Sbjct 273 ATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCA 332 Query 6938 GAGTCATGGGACAATTCCTAGGATATCCCAGTT-TGATCGAAAAAACTCATGACTTTTTT 6996 |||| || | | | || | ||||| | | | | | |||| | || || Sbjct 333 CCATCATTGGGAAGGTTTTTGG-TCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTC 391 Query 6997 CAAGACAG-CTTGATTTATTACAATGGGAGACCAGACCTGATGGAAGTGAGGGGGAATGA 7055 ||||| || |||| | ||||| | ||||||| ||||||||||| | |||| || Sbjct 392 CAAGAAAGTCTTG-TGTATTATGGTCCCCGACCAGATCTGATGGAAGTT-GTGGGA--GA 447 Query 7056 ATTATTGAACAAAACAGACAAGCTT--GTCTGTTGGGATGGTCAGGCTGGAGGACTGGAA 7113 | | || ||| | || | || || |||||||| || ||| ||| ||| ||||| Sbjct 448 TTCAGTGTGCAACAAAGGCTCTTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGGAA 507 Query 7114 GGACTGAGACAAAAGGGATGGAGCATATTGAATCTACTTGTGATTCAGAGAGAGTCCAAA 7173 ||||||||||| ||||| ||||| || | ||||| ||||| | | | ||| |||| Sbjct 508 GGACTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAAG 567 Query 7174 ATCAGAAACACCAAAGTGCAAACATTGGCTCAGGGAGACAATCAA 7218 | | | || || || ||||| | || || |||||||||||| Sbjct 568 ACCCGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAA 612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36558891142224