Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_020805.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq17807 87.8 1e-13 >seq17807 Length=6784 Score = 87.8 bits (96), Expect = 1e-13 Identities = 248/377 (66%), Gaps = 3/377 (1%) Strand=Plus/Minus Query 6305 ATCGGATTAAAAGGAAAAGAAAGAGAACTGAAGATTGCAGGTAGATTTTTCTCATTGATG 6364 ||||| | |||||||| || | ||| | ||| | || ||||| || ||||||||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 6365 TCTTGGAAGCTTAGGGAATACTTTGTTGTCACAGAGTATTTGATCAAG-ACTCACTTTGT 6423 || ||||| ||| | | || || || || | || |||||||| | | | ||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 6424 GCCATTGTTCCATGGGCTGACCATGGCTGATGATATGACAGCAGTGATCAAAAAGATGCT 6483 |||| ||||| || || || ||||| |||||| | || ||| | |||||| | || Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 6484 GGAAAGCTCGTCTGGTC-AAGGGCTAACAAACTACGACAGCGTTTGTATTGCAAATCATA 6542 || | ||| | || | |||| | | |||| || | ||| || || || || Sbjct 5236 AGATAACTC-TGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCACG 5178 Query 6543 TTGACTATGAAAAATGGAATAATCATCAACGAAAATTGTCCAATGGACCTGTGTTTAAAG 6602 | || |||||||| |||||||||||||| || | ||||| | || || |||| Sbjct 5177 TGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAG 5118 Query 6603 TCATGGGACAATTCTTGGGTTATCCAAATTTGATATACCGGACACATGAGTTTTTTGAGA 6662 | |||||||| ||| | | || ||| | | || ||||| ||||||| ||| Sbjct 5117 TGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAGA 5058 Query 6663 AAAGTTTAATTTACTAT 6679 | ||| | || || ||| Sbjct 5057 ACAGTCTCATCTATTAT 5041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35387193207616