Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022581.1 Length=11806 Score E Sequences producing significant alignments: (Bits) Value seq12203 96.9 3e-16 seq186615 91.5 1e-14 seq70391 80.6 2e-11 >seq12203 Length=1511 Score = 96.9 bits (106), Expect = 3e-16 Identities = 167/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 6882 GAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATT--ACGTCCCTCTCTTTAAAG 6939 ||||| || || || || ||| |||| ||| || ||| |||| || || ||| || Sbjct 1451 GAGTACTTCGTCATTACGGAACACCT--TCAGAAGCAATTCTACGTACCCCTATTTGGAG 1394 Query 6940 GATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAAGATGTTAGAAAGAAGTCAA- 6998 | | ||||||||||| || | || | ||| || ||| |||| || | | ||| Sbjct 1393 GTCTCACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTGTTGGACA--ATTCATT 1336 Query 6999 -GGACAAGGAGAGGATGATTACGAGCACGTCAGCATTGCCAACCACATTGATTATGAAAA 7057 |||||||| | | |||||| | || | ||| |||||||| |||||||||||||| Sbjct 1335 GGGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCATATTGATTATGAAAA 1276 Query 7058 ATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCATGGGACAAT 7116 |||||||||||| ||||| ||| | || | | ||||||| || ||||| |||| Sbjct 1275 ATGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACTGTGATGGGGCAAT 1217 >seq186615 Length=1208 Score = 91.5 bits (100), Expect = 1e-14 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 6882 GAGTATTTTGTAATAACTGAATACCTGATCAA--AACTCATTACGTCCCTCTCTTTAAAG 6939 ||||| || || | || ||| |||| | || || || || || || || ||| || Sbjct 61 GAGTACTTCGTCCTTACGGAACACCTTCTGAAGCAATTC--TATGTACCCCTATTTGGAG 118 Query 6940 GATTGACCATGGCAGATGACATGACGGAGGTCGTCAAGAAGATGTTAGAAAGAAGTCAA- 6998 | | ||||||||||| ||| | || | ||| || | | |||| || | | ||| Sbjct 119 GTCTCACCATGGCAGACGACTTAACCAAAGTCACAAAAAGGCTGTTGGACA--ATTCATT 176 Query 6999 -GGACAAGGAGAGGATGATTACGAGCACGTCAGCATTGCCAACCACATTGATTATGAAAA 7057 ||||||||| | | |||||| | || | ||| |||||||||| ||||||||||| Sbjct 177 GGGACAAGGACAAAACGATTACCAATCTGTTACCATCGCCAACCACAACGATTATGAAAA 236 Query 7058 ATGGAACAACCATCAAAGGAAAGAGTCTAACGGCCCGGTGTTCAGAGTCATGGGACAATT 7117 |||||||||||| |||| ||| | || ||| ||||||| || ||||||| ||| Sbjct 237 ATGGAACAACCACCAAAAAGGAGACGCCGACAACCCTGTGTTCACTGTGATGGGACGATT 296 Query 7118 TCTGGG 7123 |||| Sbjct 297 CTTGGG 302 >seq70391 Length=2338 Score = 80.6 bits (88), Expect = 2e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 6804 ATTATCGGACTGAAGGGAAAAGAGAGGGAACTaaaaaaaGCTGGACGGTTCTTTTCTCTA 6863 || ||||| || || || ||||| | ||| | || ||| ||| |||||||||| | Sbjct 1834 ATCATCGGTCTCAAAGGCAAAGAACGCGAAATTAAGTAAGAAGGAAGGTTCTTTTCCTTG 1893 Query 6864 ATGTCCTGGGAATTGAGGGAGTATTTTGTAATAACTGAATACCTGATCAAAACTCATTAC 6923 ||||| ||| | ||||| |||| ||||| | ||||||| ||||||||||| ||| Sbjct 1894 ATGTCATGGAAGATGAGGCAGTACTTTGTCACAACTGAACACCTGATCAAAGAATTTTAT 1953 Query 6924 GTCCCTCTCTTTAAAGGATTGACCATG 6950 ||||| || || | || ||| | ||| Sbjct 1954 GTCCCACTGTTCTAGGGGTTGGCAATG 1980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37577342480480