Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_022755.1 Length=10692 Score E Sequences producing significant alignments: (Bits) Value seq17807 141 6e-30 >seq17807 Length=6784 Score = 141 bits (156), Expect = 6e-30 Identities = 394/601 (66%), Gaps = 5/601 (1%) Strand=Plus/Minus Query 5935 GAAGACCTTATTATAGGCCTCAAAGCAAAGGAACGTGAGTTGAAAACCGTAGGTCGGTTC 5994 || ||||| ||||| || || |||| |||||| || || | || | || | ||| Sbjct 5428 GACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTC 5369 Query 5995 TTCTCTCTAATGTCTTGGAAATTAAGAGAATACTTCGTGATAACAGAGTATCTCATAAAG 6054 || || | ||||| ||||| | | | || ||||| | ||| | |||| || ||| Sbjct 5368 TTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAG 5309 Query 6055 -ACTCATTTTGTTCCTTTGTTTCACGGGCTCACCATGGCGGACGACCTGACAGCTGTTAT 6113 | | || ||| || |||| ||| ||||| |||||||| || || || |||| Sbjct 5308 GAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTAC 5249 Query 6114 GAAGAAAATGATGGAGTCATCTTCAGGACAAGGCGCCTCCGACTATGATGCCATTGCCAT 6173 ||| || | | || ||| ||||| || |||||||| ||||| |||| Sbjct 5248 GAAAAAGCTTCTAGATAACTCTGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCAT 5189 Query 6174 TGCGAACCATATTGACTATGAAAAATGGAATAACCATCAACGGAAAGAATCCAATGGTCC 6233 || ||||| | || |||||||| |||||||| ||||| || || ||||| | Sbjct 5188 CGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACAC 5129 Query 6234 TGTCTTCAGAGTCATGGGTCAGTTCCTAGGGTATCCAAATTTAATTTACCGGACGCATGA 6293 || |||| ||| ||||| |||||||||| || ||| | || || || || | Sbjct 5128 CGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAA 5069 Query 6294 GTTTTTTGAGAATAGCCTCATATATTACAATAACAGACCCGACCTGATGAGAGTGGTGAA 6353 |||||| |||| || ||||| ||||| |||| ||||| ||| |||| | Sbjct 5068 GTTTTTCCAGAACAGTCTCATCTATTATGGGCCTCGACCAGACCTAATGGAAGTGATCGG 5009 Query 6354 TAATACCGT--GGAGAACAGTTCTGATCAAAGAGTCTGCTGGAATGGTCAGGCAGGGGGG 6411 || || | | || | || | || || |||| ||| | |||||| || ||| Sbjct 5008 AGATTCCCTCAGAAGTAAAGAAGCGTTCCTAG--TCTGTTGGGAAGGTCAGCTGGGAGGG 4951 Query 6412 CTCGAAGGACTGCGGCAAAAAGGATGGAGTATATTAAATTTGCTGGTGATAGCTAGGGAA 6471 || || || || || || || |||||||| || | ||| | || ||| || || || Sbjct 4950 CTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAG 4891 Query 6472 TCTCAGATTAGAAACACCTCTGTCAAAACTCTGGCACAGGGGGACAATCAGGTGATTTGC 6531 | ||| |||||||| | || || || ||||| ||||| ||||||||||| || ||| Sbjct 4890 GCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGC 4831 Query 6532 A 6532 | Sbjct 4830 A 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34020744390144