Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_024473.1 Length=11123 Score E Sequences producing significant alignments: (Bits) Value seq36615 104 2e-18 seq66067 82.4 5e-12 >seq36615 Length=1239 Score = 104 bits (114), Expect = 2e-18 Identities = 542/843 (64%), Gaps = 33/843 (4%) Strand=Plus/Plus Query 6265 ATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAA--AACATACT 6322 ||||||||||| | || | || ||||| | || | |||| ||||| | | | | Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTT--T 152 Query 6323 ACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCACATCGGTGATTAAGAAGA 6382 |||||||| | || ||||| || ||||| ||||| |||||| |||| ||||| Sbjct 153 ACGTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAAC 212 Query 6383 TGATGGACAGTTC-ATCAGGTCAAGGGCTCGATGATTATTCATCAGTTTGTTTGGCTAAC 6441 | | |||| || |||| || || | | |||||| || ||| | | || ||| Sbjct 213 TCCTCGACAACTCGATCAAC-CAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAAC 271 Query 6442 CATATTGACTACGAGAAGTGGAATAACCATCAAAGAAAGGAATCTAATGGTCCCATCTTC 6501 ||| ||||||||||||| ||||| || ||||||||| |||| | |||| || ||||| Sbjct 272 CATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTC 331 Query 6502 AGAGTCATGGGACAGTTTCTGGGTTATCCATCACTCATAGAGAGAACTCATGAATTTTTT 6561 | |||| || || || | ||| ||| || | | | |||| | ||| || Sbjct 332 ACCATCATTGGGAAGGTTTTTGGTCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTC 391 Query 6562 GAGAAAAGCTTAATTTATTACAATGGGCGTCCTGATCTAATGACCGTTCGAAATGGCACA 6621 | |||| | | ||||| | || || ||||| ||| ||| ||| | | Sbjct 392 CAAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTT----GTGGGAGA 447 Query 6622 TTGTGTAATTCCACTAA-GCAC---CGGGTTTGTTGGAATGGGCAAAAAGGAGGTTTGGA 6677 || || | | || || || | ||| |||||| | || || || || ||||| Sbjct 448 TTCAGT-GTGCAACAAAGGCTCTTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGGA 506 Query 6678 AGGACTAAGACAAAAGGGATGGAGTATTGTGAATCTCTTGGTTATTCAAAGGGAAGCCAA 6737 |||||| ||||| ||||| |||||||| || |||||| | ||| | | | || ||||| Sbjct 507 AGGACTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAA 566 Query 6738 AATTCGAAACACAGCAGTGAAGGTCTTAGCACAGGGAGATAATCAGGTTATATG-CACTC 6796 | || || ||| || || | ||||| ||||| ||||| | ||||| |||| Sbjct 567 GACCCGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATGTAACTC 626 Query 6797 -AATACAAGACAAAGAAAACCAGATCA-GAATTGGAATTAAGAG-CAGTCTTACATCAGA 6853 ||| | || || | || || | || | ||| | | || ||| | | || || Sbjct 627 GTATAAATTAC-CTGAGA--CAAATGACGAGTCTGAACTCAAAGCCAGAAT--CGTC-GA 680 Query 6854 TGGCAGGAAACAATAATAA---AATCATGGAAGAAATTAAGAGAGGGACAGAGAAGTTGG 6910 | || | | |||||| || ||||| | ||| | ||||||||| ||||||| Sbjct 681 GGTCATG-ACCAATAACAACGTAATCAAGAAAGCGGTCTCTCAAGGGACAGAAAAGTTGG 739 Query 6911 GCCTAATCATAAATGATGATGAGACTATGCAATCAG--CAGACTATTTAAATTACGGGAA 6968 | | || |||||| | ||| | || || || || | || | || ||||| || Sbjct 740 GGCCGATTATAAATCAAGATTAAACCAT--AAGGAGCTCTGATTTCTTGTCCTACGGTAA 797 Query 6969 AATTCCAATTTTCCGGGGAGTCATAAGAGGACTAGAAACAAAGAGATGGTCACGGGTAAC 7028 ||| || ||| ||| || || | ||| ||| | ||||||||||| || || || Sbjct 798 AATCCCTGTTTACCGAGGGTATATTCTACCACTGGAAGCCAAGAGATGGTCGCGAGTCAC 857 Query 7029 ATGTGTCACTAATGATCAGATCCCGACATGTGCCAATTTGATGTCCTCAGTCTCCACCAA 7088 | ||| || |||||||| || || || || ||| | ||||| | || | || || Sbjct 858 TTATGTGACCAATGATCAAATTCCCTCACTGGCAAATGTCATGTCAACCATCGCAACAAA 917 Query 7089 TGC 7091 ||| Sbjct 918 TGC 920 >seq66067 Length=1491 Score = 82.4 bits (90), Expect = 5e-12 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6196 GACGATTTGATAATTGGATTAAAGGGAAAAGAAAGAGAATTGAAAATAGCTGGGAGATTC 6255 ||||| | || |||||| | ||||| |||||| |||| | |||| | || || ||| Sbjct 1033 GACGACCTCATCATTGGACTTAAGGGCAAAGAATGAGAGATTAAAAAGGAGGGAAGGTTC 1092 Query 6256 TTCTCATTGATGTCATGGAGATTAAGGGAATATTTTGTGATCACGGAGTACTTAATCAAA 6315 |||||||||||||| |||| | | || |||| || |||| ||| ||| | | |||| | Sbjct 1093 TTCTCATTGATGTCTTGGAAAATGAGACAATACTTCGTGACCACCGAGCATATGATCAGA 1152 Query 6316 ACATACTACGTTCCCTTGTTTAAGGGGTTAACTATGGCAGATGACCTCAC 6365 | ||| || || |||||| | | || ||||| || ||||| || Sbjct 1153 GAGTTCTATGTCCCATTGTTTTCAGAAATGACAATGGCTGACGACCTTAC 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35396771119888