Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025255.1 Length=11135 Score E Sequences producing significant alignments: (Bits) Value seq36615 120 2e-23 seq12203 91.5 1e-14 >seq36615 Length=1239 Score = 120 bits (132), Expect = 2e-23 Identities = 361/548 (66%), Gaps = 17/548 (3%) Strand=Plus/Plus Query 6327 ATGTCCTGGAAGCTCAGAGAGTATTTTGTCATCACTGAGTATTTGATTAAGACGCACTTT 6386 ||||| |||| | | ||| |||| ||||| | || | | || || ||| || | Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTAC 154 Query 6387 GTCCCGATGTTTAAAGGGTTGACCATGGCGGATGACTTGACAGCGGTGATAAAGAAGATG 6446 || || | || ||||||||| ||||| ||||| | ||| |||| ||||| | Sbjct 155 GTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACTC 214 Query 6447 ATGGACACATCT-TCAGGACAAGGCTTAGATAATTATGAATCCATTTGTATAGCCAACCA 6505 | |||| || ||| || ||| | | |||| ||||||| | |||||||||| Sbjct 215 CTCGACAACTCGATCAAC-CAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACCA 273 Query 6506 TATTGACTATGAGAAGTGGAACAATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTCAA 6565 | ||||||| ||||| |||||||||||||||||| || | || | || || |||| Sbjct 274 TGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCAC 333 Query 6566 GGTGATGGGTCAATTCTTGGGATATCC---ACGTCTGATTGAGAGAACTCATGAATTTTT 6622 | || || | | || || | ||| | |||| ||| | |||| | ||| || Sbjct 334 CATCATTGGGAAGGTTTTTGG-TCTCCCAAATGTCT--TTGCACGCACTCCCGCATTCTT 390 Query 6623 TGAGAAGAGTCTGATATATTACAATGGACGACCAGATCTGATGCGGGTTCGAGGAAATTC 6682 | | ||||| | ||||| | ||||||||||||||| ||| ||| |||| Sbjct 391 CCAAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTC 450 Query 6683 TCTAGTCAAC---GCCTCATCTTTAAATGTCTGCTGGGAGGGTCAAGCTGGGGGATTAGA 6739 | |||| | ||| | || || || ||||| || || ||| ||||| || Sbjct 451 AGTGTGCAACAAAGGCTCTTTTT----GGTGTGTTGGGAAGGACAGCTTGGTGGATTGGA 506 Query 6740 AGGACTGCGACAGAAGGGATGGAGTATTCTAAATTTGCTTGTCATTCAGAGAGAAGCAAA 6799 ||||||| |||||||||| |||||||| | ||| | ||||| | | | || || || Sbjct 507 AGGACTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAA 566 Query 6800 AATAAGGAACACCGCCGTGAAAGTGCTAGCTCAAGGTGACAATCAGGTGATATGT-ACTC 6858 | |||| || || ||| || || ||||| |||||||| | |||||| |||| Sbjct 567 GACCCGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATGTAACTC 626 Query 6859 AGTATAAA 6866 ||||||| Sbjct 627 -GTATAAA 633 >seq12203 Length=1511 Score = 91.5 bits (100), Expect = 1e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6408 ACCATGGCGGATGACTTGACAGCGGTGATAAAGAAGATGATGGACACATCTTCAGGACAA 6467 |||||||| || |||| || || | ||| ||| || |||||| || | |||||| Sbjct 1388 ACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTGTTGGACAATTCATTGGGACAA 1329 Query 6468 GGCTTAGATAATTATGAATCCATTTGTATAGCCAACCATATTGACTATGAGAAGTGGAAC 6527 || | | |||| |||| || || |||||||||||||| ||||| || |||||| Sbjct 1328 GGGCAAAACGATTACCAATCTGTTACCATCGCCAACCATATTGATTATGAAAAATGGAAC 1269 Query 6528 AATCATCAAAGAAAAGAGTCGAACGGGCCCGTGTTCAAGGTGATGGGTCAATTCTTGGGA 6587 || || |||||| ||| | || | ||||||| |||||||| |||| |||||| Sbjct 1268 AACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACTGTGATGGGGCAATACTTGGGT 1209 Query 6588 TATCCACGTCTGATTGAGAGAACTCATGAATTTTT 6622 ||| || || | ||||||| || ||||| Sbjct 1208 CCGCCAAACTTGTTTAACCGAACTCACGAGTTTTT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35435082768976