Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025342.1 Length=11120 Score E Sequences producing significant alignments: (Bits) Value seq186615 82.4 5e-12 seq12203 80.6 2e-11 >seq186615 Length=1208 Score = 82.4 bits (90), Expect = 5e-12 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 6473 CATCGCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGG 6532 ||||||||| |||| || ||||||||||||||||| || |||| | |||||| | Sbjct 210 CATCGCCAACCACAACGATTATGAAAAATGGAACAACCACCAAAAAGGAGACGCCGACAA 269 Query 6533 CCCTGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTT 6577 |||||| || | || ||||||| |||||||| || ||||| || Sbjct 270 CCCTGTGTTCACTGTGATGGGACGATTCTTGGGTTTGCCAAACTT 314 >seq12203 Length=1511 Score = 80.6 bits (88), Expect = 2e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 6473 CATCGCCAATCACATTGACTATGAAAAATGGAACAATCATCAAAGAAAGGACGCCACCGG 6532 ||||||||| || ||||| ||||||||||||||||| || |||||| |||||| | Sbjct 1302 CATCGCCAACCATATTGATTATGAAAAATGGAACAACCAACAAAGAGGAGACGCCGACAA 1243 Query 6533 CCCTGTCTTTAAGGTCATGGGACAGTTCTTGGGATTACCAAATTTAATCTATCGAACACA 6592 | |||| || | || ||||| || | |||||| ||||| || | | ||||| || Sbjct 1242 CTCTGTGTTCACTGTGATGGGGCAATACTTGGGTCCGCCAAACTTGTTTAACCGAACTCA 1183 Query 6593 TGAGTTCTT 6601 ||||| || Sbjct 1182 CGAGTTTTT 1174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35387193207616