Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025353.1 Length=11070 Score E Sequences producing significant alignments: (Bits) Value seq17807 161 7e-36 seq36615 111 1e-20 >seq17807 Length=6784 Score = 161 bits (178), Expect = 7e-36 Identities = 399/594 (67%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 6243 ATCGGGCTGAAAGGGAAAGAACGAGAATTAAAATTGGCCGGCAGAtttttttCTCTTATG 6302 |||||||||||||| || || || ||| | || || |||||||| ||||| | ||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 6303 TCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTT-TGT 6361 || ||||| | | | |||||||| | || | || | || ||| ||| ||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 6362 CCCCATGTTTAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAATGAT 6421 || |||| || | |||||||| |||||||| || || | || || | | Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 6422 GGATACCTCATCAGGAC-AGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATCACA 6480 |||| ||| | | || | ||| | | | || || || |||| ||| ||||| ||| Sbjct 5236 AGATAACTC-TGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCACG 5178 Query 6481 TTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTAGGG 6540 | |||||||| |||||||| ||||| ||||| || ||||| | || || | | Sbjct 5177 TGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATTCAAAG 5118 Query 6541 TAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTGAAA 6600 | |||||||| ||||| | | ||| ||| | ||| || || || | || || | | Sbjct 5117 TGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAGA 5058 Query 6601 AAAGTCTGATTTACTATAATGGACGTC---CAGACCTGATGCGAGTAAACGGAAACACCT 6657 | ||||| || |||| |||| | || ||||||| ||| ||| | |||| | || Sbjct 5057 ACAGTCTCAT---CTATTATGGGCCTCGACCAGACCTAATGGAAGTGATCGGAGATTCCC 5001 Query 6658 T-AGAAA-ACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCTGG-AGGCTTAGAGG 6714 | |||| | |||| || | || |||||| ||||||| ||||| ||| | |||| Sbjct 5000 TCAGAAGTAAAGAAGCGTTCCTA--GTCTGTTGGGAAGGTCA-GCTGGGAGGGCTTGAGG 4944 Query 6715 GGCTTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAAAGAGAAGCAAAGA 6774 | || | || || |||||||||||| ||||||| || ||| | ||||| || |||| Sbjct 4943 GCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAGA 4884 Query 6775 TTCGAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTCATTTGCA 6828 |||| || ||| ||| || || ||||| ||||||||||| || |||| Sbjct 4883 CCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCA 4830 >seq36615 Length=1239 Score = 111 bits (122), Expect = 1e-20 Identities = 346/529 (65%), Gaps = 5/529 (1%) Strand=Plus/Plus Query 6300 ATGTCCTGGAAGTTGAGAGAATATTTCGTCATTACGGAGTATTTAATAAAGACACATTTT 6359 ||||| |||| | ||||| | || || || | || | | || || ||| | || Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTAC 154 Query 6360 GTCCCCATGTT-TAAGGGATTGACAATGGCAGATGATCTAACAGCTGTCATAAAGAAAAT 6418 || ||| | || | |||| ||||||||||| |||||||| ||| || | |||||| | Sbjct 155 GTTCCCCTATTCTCAGGG-TTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACT 213 Query 6419 GATGGATACCTC-ATCAGGACAGGGTTTGGATAATTACGACTCAATTTGCATAGCCAATC 6477 | || | ||| |||| ||||| || | ||||| || |||| ||||||| | Sbjct 214 CCTCGACAACTCGATCAAC-CAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACC 272 Query 6478 ACATTGATTATGAGAAGTGGAACAATCACCAGCGGAAAGAATCCAATGGTCCTGTTTTTA 6537 | |||| || ||||| ||||||||||| || | ||| | |||| ||||| || | Sbjct 273 ATGTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCA 332 Query 6538 GGGTAATGGGACAATTCCTTGGCTACCCCAATTTGATTGAACGCACCCATGAATTCTTTG 6597 | || || | | |||| ||| ||| | ||| |||||| | | |||||| Sbjct 333 CCATCATTGGGAAGGTTTTTGGTCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTCC 392 Query 6598 AAAAAAGTCTGATTTACTATAATGGACGTCCAGACCTGATGCGAGTAAACGGAAACACCT 6657 || ||||||| | || ||| | || ||||| |||||| ||| ||| | | Sbjct 393 AAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTCAG 452 Query 6658 TAGAAAACAGAACACCTCTCAACGTTTGTTGGCAAGGTCAAGCTGGAGGCTTAGAGGGGC 6717 | |||| || | | || |||||| |||| || ||| || || || || | Sbjct 453 TGTGCAACA-AAGGCTCTTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGGAAGGAC 511 Query 6718 TTAGACAAAAAGGATGGAGCATCCTGAATCTTCTTGTGATTCAAAGAGAAGCAAAGATTC 6777 | ||||| || || ||||| ||| | ||||| ||||| | | | || || |||| | Sbjct 512 TGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAAGACCC 571 Query 6778 GAAATACAGCGGTCAAGGTGCTAGCTCAGGGAGACAATCAGGTCATTTG 6826 | |||||| |||||| || || || ||||||||||| |||| || Sbjct 572 GGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATG 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35227561336416