Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025356.1 Length=11097 Score E Sequences producing significant alignments: (Bits) Value seq17807 118 7e-23 >seq17807 Length=6784 Score = 118 bits (130), Expect = 7e-23 Identities = 364/553 (66%), Gaps = 15/553 (3%) Strand=Plus/Minus Query 6343 GGAAGATTCTTTTCCCTGATGTCCTGGCAACTGAGAGAATATTTTGTCATCACCGAGTAC 6402 || ||||||||||| ||||||| ||| | || | | ||||| || | || | | Sbjct 5377 GGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACAT 5318 Query 6403 TTAATAAAG-ACTCATTATGTACCATTATTCAAAGGACTCACAATGGCGGATGATCTGAC 6461 | || ||| | | |||||| ||| | ||| || |||||||||||||||||||| || Sbjct 5317 CTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCAC 5258 Query 6462 ATCAGTTGTAAAGAAGATGTTGGACAACACGAATGGAC-AAGGACTGGATGATTATTCAT 6520 |||| || ||| | | || ||| | || || |||| | | ||| ||| | Sbjct 5257 CAAAGTTACGAAAAAGCTTCTAGATAACTCTG-TGAACCAAGGTCGGTCTGACTATGAGT 5199 Query 6521 CGATTTGCATCGCCAATCACATCGACTATGAGAAGTGGAATAATCATCAGAGAAAAGAAT 6580 | |||| ||||||||| ||| | || ||||| |||||||||||||||||| | || Sbjct 5198 CCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGA 5139 Query 6581 CCAATGGGCCTGTGTTTCGAGTCATGGGGCAGTTTTTGGGTTATCCCAGAT-TGTTTGAA 6639 ||||| | || || ||| ||||| ||||| | | |||| || | |||| Sbjct 5138 GCAATGACACCGTATTCAAAGTGATGGGACAGTTCCT-AGACCTCCCTAATGTCTTTGTT 5080 Query 6640 AGAACCCATGAGTTTTTTGAATCAAGCCTCATTTACTACAACGGC--AGACCAGACTTGA 6697 |||| || ||||||| | || ||||| || | | ||| |||||||| | | Sbjct 5079 CGAACACACAAGTTTTTCCAGAACAGTCTCATCTATT--ATGGGCCTCGACCAGACCTAA 5022 Query 6698 TGGATGTAAGAGGAGATTCGTTGATCAATACCACTGAAAAGT---TGGTGTGTTGGGAGG 6754 |||| || | |||||||| ||| | | ||| || | || |||||||| | Sbjct 5021 TGGAAGTGATCGGAGATTC---CCTCAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAG 4965 Query 6755 GTCAGGCGGGAGGATTGGAAGGATTGAGACAAAAAGGATGGAGTGTGCTGAATCTGTTAG 6814 ||||| |||||| | || || | | || || |||||||| | ||||||| ||| Sbjct 4964 GTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAG 4905 Query 6815 TCATAAACAGGGAATCATCCATAAGAAATACAATCGTGAAAGTACTAGCGCAGGGAGACA 6874 | || || || | | ||||| || | ||||| || || ||||| |||| Sbjct 4904 TGTTATTGAGAGAGGCCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACA 4845 Query 6875 ATCAGGTCATCTG 6887 ||||||| ||||| Sbjct 4844 ATCAGGTAATCTG 4832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35313762546864