Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025359.1 Length=11526 Score E Sequences producing significant alignments: (Bits) Value seq17807 107 1e-19 >seq17807 Length=6784 Score = 107 bits (118), Expect = 1e-19 Identities = 215/312 (69%), Gaps = 9/312 (3%) Strand=Plus/Minus Query 6652 TTATAGGACTCAAAGAAAAAGAAAGAGAACTTAAGGAGGAGGGAAGATTCTTTTCTCTTA 6711 |||| || || |||| ||| || | ||| ||||||||||||| ||||||||||| | | Sbjct 5418 TTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGA 5359 Query 6712 TGGGTTGGAAACTTCGACTTTATTTTGTGATAACTG-AGTTCTTAATCAA-GAAATTCTA 6769 || ||||| ||||| | ||||| || | ||||| | || | ||||| || || || Sbjct 5358 TGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATC-TGATCAAGGAGTTTTTA 5300 Query 6770 CGTGCCGATGTTCAAAGGACTGACTATGGCGGATGACCTGAACACGGTAACTAAAAAACT 6829 ||||| ||||| || || || ||||||||||| || | || || || ||||| || Sbjct 5299 TGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCT 5240 Query 6830 CCT---TAAAGCAACAGAAGGGCAAGGAAGAGACGATTATGACGAAATTTACATCGCCAA 6886 || ||| | ||| ||||| | || ||||| |||| ||||||||| Sbjct 5239 TCTAGATAACTC-TGTGAA--CCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAA 5183 Query 6887 CTCGTTGGATTACGACAAATGGAACAACAACCAACGCTATGAGTCTAATGAACATGTATT 6946 | ||||||| || || ||||| || | || ||| |||| ||||| ||||| Sbjct 5182 CCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTATT 5123 Query 6947 CAGAGTTATGGG 6958 || ||| ||||| Sbjct 5122 CAAAGTGATGGG 5111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36683404001760