Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025364.1 Length=11019 Score E Sequences producing significant alignments: (Bits) Value seq12203 96.9 2e-16 seq186615 93.3 3e-15 >seq12203 Length=1511 Score = 96.9 bits (106), Expect = 2e-16 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 6294 GTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAGATG 6353 || || |||||| |||||||||||||| ||| || | || ||||| |||||| || Sbjct 1409 GTACCCCTATTTGGAGGTCTCACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTG 1350 Query 6354 TTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCTGGCCAACCAT 6413 ||||| | |||| |||||||| |||||| | | || | | ||||||||| Sbjct 1349 TTGGACAATTCATTGGGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCAT 1290 Query 6414 ATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTCCTGTCTTCAAG 6473 || |||||||||||||||||||| || || || | | || |||| |||| Sbjct 1289 ATTGATTATGAAAAATGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACT 1230 Query 6474 GTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATAT-ACAGAACTCATGAATTTTT 6529 || ||||| ||| | ||||||| | || || | | || ||||||| || ||||| Sbjct 1229 GTGATGGGGCAA-TACTTGGGTCCGCCAAACTTGTTTAACCGAACTCACGAGTTTTT 1174 >seq186615 Length=1208 Score = 93.3 bits (102), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 6293 TGTGCCTCTATTTCATGGTCTCACCATGGCTGACGACATGACTGCAGTCATCAAAAAGAT 6352 ||| || |||||| |||||||||||||| |||||| | || ||||| |||| | | Sbjct 102 TGTACCCCTATTTGGAGGTCTCACCATGGCAGACGACTTAACCAAAGTCACAAAAAGGCT 161 Query 6353 GTTGGAAAGCTCATCTGGACAAGGTTTGTTAGATTACTCAGCGGTATGCCTGGCCAACCA 6412 |||||| | |||| |||||||| |||||| | | || | | |||||||| Sbjct 162 GTTGGACAATTCATTGGGACAAGGACAAAACGATTACCAATCTGTTACCATCGCCAACCA 221 Query 6413 TATAGATTATGAAAAATGGAACAATCACCAGCGAAAATTGTCAAACGGTCCTGTCTTCAA 6472 | |||||||||||||||||||| ||||| | | | || ||||| |||| Sbjct 222 CAACGATTATGAAAAATGGAACAACCACCAAAAAGGAGACGCCGACAACCCTGTGTTCAC 281 Query 6473 GGTCATGGGCCAATTCCTTGGGTTTCCGAATCTAATATACA 6513 || ||||| | ||| ||||||||| | || || | |||| Sbjct 282 TGTGATGGGACGATT-CTTGGGTTTGCCAAACTTGTTTACA 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35064736827792