Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025371.1 Length=11082 Score E Sequences producing significant alignments: (Bits) Value seq36615 120 2e-23 seq66067 87.8 1e-13 >seq36615 Length=1239 Score = 120 bits (132), Expect = 2e-23 Identities = 349/535 (65%), Gaps = 17/535 (3%) Strand=Plus/Plus Query 6350 ATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTAAGACCCATTAT 6409 ||||| ||| | ||||| |||||||||| | ||| || | | || ||| | ||| Sbjct 95 ATGTCATGGAGGATGAGACAGTACTTTGTTACAACAAAACACTTCATCAAGGAGCTTTAC 154 Query 6410 GTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCACATCAGTCGTGAAGAAGATG 6469 ||||| ||||| ||| ||||| ||||| ||||| |||||| ||| ||||| | Sbjct 155 GTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACTC 214 Query 6470 TTGGACAACACAAACGGACAAGGATTAGACGACTATTCATCGATTTGTATAGCGAATCAC 6529 | |||||| | | | || || | || || || |||| | |||| || || Sbjct 215 CTCGACAACTCGATCAACCAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACCAT 274 Query 6530 ATTGATTACGAAAAATGGAACAATCATCAGAGGAAAGAGTCAAATGGACCGGTCTTTCGC 6589 |||| ||||| ||||||||||||||||| || || |||||| || ||||| | Sbjct 275 GTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCACC 334 Query 6590 GTCA-TGGGACAATTTTTGGGATATCCC-CGGCTGTTTGAGAGAACTCACGAGTTCTTTG 6647 ||| ||||| ||||||| | |||| | |||| | |||| || ||||| Sbjct 335 ATCATTGGGAAGGTTTTTGG--TCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTCC 392 Query 6648 AATCCAGCCTCATTTACTACAATGGCAGACCAGATTTGATGGATGTGAGGGGAGATTCTT 6707 || || || | || || | | |||||||| ||||||| || ||||||||| Sbjct 393 AAGAAAGTCTTGTGTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTCAG 452 Query 6708 TGGTCAACACCACAGAAAAGC------TGGTTTGTTGGGAAGGCCAAGCAGGAGGGCTAG 6761 || |||| ||| || |||| ||||||||||| || || || | | Sbjct 453 TGTGCAAC-------AAAGGCTCTTTTTGGTGTGTTGGGAAGGACAGCTTGGTGGATTGG 505 Query 6762 AAGGATTGAGGCAAAAAGGATGGAGCGTGTTGAATCTACTAGTCATCAATAGAGAGTCAT 6821 ||||| |||| || || || ||||| | | ||||| || || | | | ||| | Sbjct 506 AAGGACTGAGACAGAAGGGTTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCA 565 Query 6822 CCATCAGGAACACGATAGTCAAAGTATTAGCTCAGGGAGACAATCAGGTCATATG 6876 | | |||| || | |||||| | | || || ||||||||||| ||||||| Sbjct 566 AGACCCGGAATACATTGGTCAAAACACTCGCACAAGGAGACAATCAACTCATATG 620 >seq66067 Length=1491 Score = 87.8 bits (96), Expect = 1e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 6287 CTCATCATAGGATTGAAGGGAAAAGAGAGAGAGTTAAAGATCGCCGGAAGGTTCTTTTCA 6346 |||||||| ||| | ||||| ||||| ||||| | || | | ||||||||||| ||| Sbjct 1039 CTCATCATTGGACTTAAGGGCAAAGAATGAGAGATTAAAAAGGAGGGAAGGTTCTTCTCA 1098 Query 6347 CTGATGTCTTGGCAGTTGAGAGAGTACTTTGTGATAACGGAATATCTGATTA-AGACCCA 6405 ||||||||||| | ||||| | ||||| |||| || || || |||| | ||| Sbjct 1099 TTGATGTCTTGGAAAATGAGACAATACTTCGTGACCACCGAGCATATGATCAGAGA-GTT 1157 Query 6406 TTATGTTCCACTATTTAAAGGATTGACTATGGCAGATGACCTCAC 6450 ||||| ||| | ||| || | |||| ||||| || ||||| || Sbjct 1158 CTATGTCCCATTGTTTTCAGAAATGACAATGGCTGACGACCTTAC 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35265872985504