Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025376.1 Length=11096 Score E Sequences producing significant alignments: (Bits) Value seq17807 150 1e-32 >seq17807 Length=6784 Score = 150 bits (166), Expect = 1e-32 Identities = 586/906 (65%), Gaps = 29/906 (3%) Strand=Plus/Minus Query 6297 CTCATCATAGGGTTAAAAGGAAAGGAGAGAGAATTGAAAATTGCCGGAAGATTTTTCTCC 6356 || || || ||| | |||||||||||| | ||| | || | || ||||| || || Sbjct 5422 CTAATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCA 5363 Query 6357 CTAATGTCATGGCAGTTAAGGGAGTACTTCGTCATCACAGAGTACTTGATCAAA-ACACA 6415 | ||||||||| | | | |||| ||||| | || | | ||||||| | Sbjct 5362 TTGATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTT 5303 Query 6416 CTATGTCCCGTTGTTCAAGGGACTGACGATGGCAGATGACCTTACATCCGTTGTGAAGAA 6475 ||||| || ||||| || || || ||||| ||||| || || ||| ||| || Sbjct 5302 TTATGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAA 5243 Query 6476 GATGTTGGACAACACAAATGGACAAGGATTGGA-TGACTACTCCTCTATCTGTATTGCCA 6534 | | | || ||| | || || | | | || |||||| || || | || |||| Sbjct 5242 GCTTCTAGATAACTCTG-TGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCA 5184 Query 6535 ACCACATTGACTACGAAAAATGGAATAATCATCAGAGGAAAGAGTCTAATGGTCCAGTGT 6594 ||||| | || || ||||| ||||||||||||||| | ||| |||| | || | Sbjct 5183 ACCACGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACCGTAT 5124 Query 6595 TTCGAGTAATGGGACAGTTTCTAGGGTATCCTAGACTGTTTGAAAGGACACATGAGTTCT 6654 | ||| ||||||||||| |||| |||| | |||| | ||||| |||| | Sbjct 5123 TCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTT 5064 Query 6655 TTGAGTCCAGCCTCATCTACTACAATGGAA---GACCAGACCTGATGGATGTGAGAGGGG 6711 | || ||| |||||||| || ||| |||||||||| ||||| |||| || | Sbjct 5063 TCCAGAACAGTCTCATCTATTA---TGGGCCTCGACCAGACCTAATGGAAGTGATCGGAG 5007 Query 6712 ATTCATTGATCAACACTACAGACAAATT---AGTGTGTTGGGAGGGACAAGCAGGAGGTC 6768 |||| | || | || ||| || ||| |||||||| || || ||||| | Sbjct 5006 ATTCCCT---CAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGC 4950 Query 6769 TGGAAGGATTGCGACAAAAAGGATGGAGCGTTTTGAACCTACTAGTCATAAACAGAGAGT 6828 | || || | || || || ||||||||| | |||| || ||||| || |||||| Sbjct 4949 TTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGG 4890 Query 6829 CTTCCATCCGAAATACTGTGGTAAAGGTTCTTGCCCAAGGAGACAATCAGGTGATCTGC- 6887 | | | |||| ||| |||| ||| || ||||| || ||||||||||| |||||| Sbjct 4889 CCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCA 4830 Query 6888 ACTC-AATACAAGACGAAAAACTACAAAAATGAAGAAGAGCTGAAGATGCTCTTATCTGC 6946 |||| ||| | | ||| | || || ||| ||||||| | |||| ||| | Sbjct 4829 ACTCGTATAAACTCCCGAAATCAAC--AACCCAAGCTGAGCTGA--AAGCTCGAATCGAC 4774 Query 6947 GA--TGGTAGATAATAATCAGACTATCATGGACAGCATTGTGACT---GGGACAGGTAAA 7001 || || | | || || | |||||||| |||| || || || | || ||| Sbjct 4773 GAAGTGATGCAGAACAACTCCATCATCATGGA-AGCA--GTAGCTCGCGGTATAGAAAAA 4717 Query 7002 CTTGGTCTCATCATCAATAATGATGAGACAATGCAATCGGCTGACTATTTAAATTACGGG 7061 ||||| || || |||||| | ||||| || |||||| | |||| | | ||||| Sbjct 4716 CTTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATACGGC 4657 Query 7062 AAGGTGCCAGTGTTCCGTGGGATTTTACGAGGATTAGAAACCAAACGATGGTCGCGGGTC 7121 || || || || | | | || | | | | | || ||||||| ||||| ||||| Sbjct 4656 AAAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGGGTC 4597 Query 7122 ACCTGCATCACGAATGATCAGATACCTACACTTGCAGGTGTGATGTCATCGGTATCAACA 7181 || || |||| || || ||||| || | | || ||||||||| || | ||| Sbjct 4596 ACGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGTGATGTCAACGACTGCTACA 4537 Query 7182 AATGCA 7187 |||||| Sbjct 4536 AATGCA 4531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35310569909440