Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025384.1 Length=11190 Score E Sequences producing significant alignments: (Bits) Value seq12203 104 2e-18 seq186615 95.1 9e-16 >seq12203 Length=1511 Score = 104 bits (114), Expect = 2e-18 Identities = 174/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 6347 GAGTACTTTGTTATCACAGAATATCTCATCA-AAG-AGTTCTACCTCCCCCTCTTCTCCG 6404 |||||||| || || || ||| | || ||| ||| | |||||| | ||||| || | Sbjct 1451 GAGTACTTCGTCATTACGGAACACCT--TCAGAAGCAATTCTACGTACCCCTATTTGGAG 1394 Query 6405 GACTCACCATGGCGGATGACTTCAACACAGTCACCGACAAAATGCTGAAG--TGCAGCGA 6462 | ||||||||||| || |||| | || |||||| | || || || | | || | Sbjct 1393 GTCTCACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTGTTGGACAATTCATTG- 1335 Query 6463 CGGACAAGGGACAAATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTAA 6522 ||||||||| ||| || ||| || |||| ||||| |||||||| | || || || Sbjct 1334 -GGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCATATTGATTATGAAAA 1276 Query 6523 ATGGAACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAATT 6582 |||||||||||| || | | ||| || |||| | || |||| ||||||||||||| Sbjct 1275 ATGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACTGTGATGGGGCAATA 1216 Query 6583 CCTGGG 6588 | |||| Sbjct 1215 CTTGGG 1210 >seq186615 Length=1208 Score = 95.1 bits (104), Expect = 9e-16 Identities = 170/247 (69%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 6347 GAGTACTTTGTTATCACAGAATATCTCATCAAAGAGTTCTACCTCCCCCTCTTCTCCGGA 6406 |||||||| || | || ||| | || | || | ||||| | ||||| || || Sbjct 61 GAGTACTTCGTCCTTACGGAACACCTTCTGAAGCAATTCTATGTACCCCTATTTGGAGGT 120 Query 6407 CTCACCATGGCGGATGACTTCAACACAGTCACCGACAAAATGCTGAAG-----TGCAGCG 6461 ||||||||||| || ||||| | || |||||| |||| |||| | | || | Sbjct 121 CTCACCATGGCAGACGACTTAACCAAAGTCACA---AAAAGGCTGTTGGACAATTCATTG 177 Query 6462 ACGGACAAGGGACAAATGACTACAAAACTGTGACCATTGCCAACCACCTGGACTACACTA 6521 |||||||| ||| || ||| || |||| ||||| ||||||||| || || | Sbjct 178 --GGACAAGGACAAAACGATTACCAATCTGTTACCATCGCCAACCACAACGATTATGAAA 235 Query 6522 AATGGAACAACCACCAGCGGGCAGAAGCAAACAATCCGGTATTCAAAGTGATGGGGCAAT 6581 |||||||||||||||| | ||| || |||| || || |||| |||||||| | || Sbjct 236 AATGGAACAACCACCAAAAAGGAGACGCCGACAACCCTGTGTTCACTGTGATGGGACGAT 295 Query 6582 TCCTGGG 6588 || |||| Sbjct 296 TCTTGGG 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35610677827296