Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025387.1 Length=11492 Score E Sequences producing significant alignments: (Bits) Value seq70391 102 6e-18 seq12203 93.3 3e-15 seq17807 82.4 6e-12 seq186615 78.8 7e-11 >seq70391 Length=2338 Score = 102 bits (112), Expect = 6e-18 Identities = 187/272 (69%), Gaps = 24/272 (9%) Strand=Plus/Plus Query 6599 ATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATG 6658 ||||| || ||| |||||| | ||| | ||| | || |||||||| || |||||| Sbjct 1837 ATCGGTCTCAAAGGCAAAGAACGCGAAATTAAGTAAGAAGGAAGGTTCTTTTCCTTGATG 1896 Query 6659 TCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATTT--TG 6716 |||||| || | ||| |||||||||| ||||| | ||||||| ||| |||| || Sbjct 1897 TCATGGAAGATGAGGCAGTACTTTGTCACAACTGAACACCTGATCA--AAGAATTTTATG 1954 Query 6717 TCCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGC 6776 |||| |||| |||||||||| | |||| ||| ||||| | | Sbjct 1955 TCCCACTGTTCTAGGGGTTGGCAA----TGATCACC--------------AAAAAACTTC 1996 Query 6777 TGGACAGTGCATAT-GGCCAGGGACTGGACGACTACAGTGCAGTGTGTATTGCCAACCAC 6835 | |||| | | ||| ||||| | || ||||||| || | | | | | |||||||| Sbjct 1997 TCGACAATTC-TATCAATCAGGGTCAGGTCGACTACCGTTCTATTTCTCTAGCCAACCAT 2055 Query 6836 ATTGATTATGAGAAGTGGAACAACCACCAGAG 6867 |||| |||||||| ||||||||||| || || Sbjct 2056 GTTGACTATGAGAAATGGAACAACCATCAAAG 2087 >seq12203 Length=1511 Score = 93.3 bits (102), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 6738 CCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCATATGGCCAGG 6797 ||||||| || || | || | || | ||||||| || |||||| | ||| || || | Sbjct 1387 CCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTGTTGGACAATTCATTGGGACAAG 1328 Query 6798 GACTGGACGACTACAGTGCAGTGTGT----ATTGCCAACCACATTGATTATGAGAAGTGG 6853 | | |||| ||| || | ||| || |||||||| ||||||||||| || ||| Sbjct 1327 GGCAAAACGATTAC----CAATCTGTTACCATCGCCAACCATATTGATTATGAAAAATGG 1272 Query 6854 AACAACCACC--AGAGGAAGGAGTCCAACAGATATGTATTCAGAGTTATGGGTCAATGTT 6911 |||||||| | |||||| || || ||| | ||| |||| || ||||| |||| | Sbjct 1271 AACAACCAACAAAGAGGA--GACGCCGACAACTCTGTGTTCACTGTGATGGGGCAATACT 1214 Query 6912 TGGGGTACCCTAACTTGATTGAACGGACTCATGAGTTCTT 6951 |||| || |||||| || | || ||||| ||||| || Sbjct 1213 TGGGTCCGCCAAACTTGTTTAACCGAACTCACGAGTTTTT 1174 >seq17807 Length=6784 Score = 82.4 bits (90), Expect = 6e-12 Identities = 563/886 (64%), Gaps = 39/886 (4%) Strand=Plus/Minus Query 6599 ATCGGGCTAAAACCAAAAGAAAGAGAATTGAAGCTGGTGGGTAGGTTCTTCTCGTTGATG 6658 |||||||| ||| ||| || | ||| | ||| || ||| || ||||| || |||||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 6659 TCATGGGAGCTCAGGGAGTACTTTGTGGTGACTGAGTATCTGATCAAGAAGCATTT-TGT 6717 |||||| | || | |||| || || |||| ||||||||||| || ||| ||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 6718 CCCTTTGTTTAAGGGGTTGGCCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCT 6777 || |||| || | | ||||| ||||| || || | || | |||||| | || Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 6778 GGACAGTGCATATG-GCCAGGGACTGGACGACTA-CAGTGCAGTGTGTATTGCCAACCAC 6835 || | | | || ||| || | | ||||| ||| || | | || ||||||||| Sbjct 5236 AGATAACTC-TGTGAACCAAGGTCGGTCTGACTATGAGTCCA-TTTCCATCGCCAACCAC 5179 Query 6836 ATTGATTATGAGAAGTGGAACAACCACCAGAGGAAGGAGTCCAACAGATA-TGTATTCAG 6894 | |||||||| |||||||| || || ||| | ||| ||| || | ||||||| Sbjct 5178 GTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAA-TGACACCGTATTCAA 5120 Query 6895 AGTTATGGGTCAATGTTTGGGGTACCCTAACTTGATTGAACGGACTCATGAGTTCTTTGA 6954 ||| ||||| || | | | |||||| | ||| || || || |||| || | Sbjct 5119 AGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCA 5060 Query 6955 GAACAGTTTGGTTTATT-TGAACATGAGACCAGATGAGATGGTGGTCGATGGTAGACATG 7013 ||||||| | | |||| || | | ||||||| |||| || ||| | ||| Sbjct 5059 GAACAGTCTCATCTATTATGGGCCT-CGACCAGACCTAATGGAAGT-GATCGGAGATTCC 5002 Query 7014 TTC-GACCGAGAGGGGACATGATGTCCTGTTGGGAGGGACAAGCAGGTGGTCTGGAAGGG 7072 || || | || | | | ||||||||| || || || || || || || Sbjct 5001 CTCAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAGGGC 4942 Query 7073 CTGAGGCAGAAGGGGTGGAGCATCCTCAACCTGCTTCTG---ATCAGA-AGGATCTCaaa 7128 || | |||||||| ||||||||| | || || || || | ||| ||| | || Sbjct 4941 CTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGG----CCAA 4886 Query 7129 aatccgaaatacaaaaataaaaatATTGGCGCAAGGGGACAATCAGGTCATCTGTACACA 7188 | | |||| || | || | |||| || || ||||||||||| ||||| | Sbjct 4885 GACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCAACTC 4826 Query 7189 GTACAAGTTGCC---ATCAACCAGGAA---TGA---GAAAGAGACTGTTGACGCCATAAA 7239 ||| || | || |||||| | | ||| ||||| | |||| | Sbjct 4825 GTATAAACTCCCGAAATCAACAACCCAAGCTGAGCTGAAAGCTCGAATCGACG------A 4772 Query 7240 AGGCATGGTCCAGAACAACAATGCCATCATGGAGTCTATAGAAGAAGGGA-CCAAGAAGT 7298 || || | ||||||||| ||||||||| | ||| || | || || | Sbjct 4771 AG---TGATGCAGAACAACTCCATCATCATGGAAGCAGTAGCTCGCGGTATAGAAAAACT 4715 Query 7299 TGGGCTTGCTCATAAACCAAGATGAGACAGTCCAATGTGCAGACTACATGAATTATGGAA 7358 ||| | || | || || |||||||| || | ||| | |||||| | || || | Sbjct 4714 TGGAC-TGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATACGGCA 4656 Query 7359 AGGTCCCAATCTTCAGAGGGAACATTAGAGGCCTGGAGACCAAGAGGTGGTCCAGGGTCA 7418 | || || | | |||||| || || | |||||| |||| | ||||| ||||||| Sbjct 4655 AAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGGGTCA 4596 Query 7419 CATGTGTTACCAACGATCAGCTCCCAACTTTTGCTAATGTGATGTC 7464 | ||||| || ||||| ||| ||||| |||| || || |||||||| Sbjct 4595 CGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGTGATGTC 4550 >seq186615 Length=1208 Score = 78.8 bits (86), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 6738 CCATGGCTGATGACCTGACAGAGGTGATAAAAAAGATGCTGGACAGTGCATATGGCCAGG 6797 ||||||| || ||| | || | || | ||||| | || |||||| | ||| || || | Sbjct 125 CCATGGCAGACGACTTAACCAAAGTCACAAAAAGGCTGTTGGACAATTCATTGGGACAAG 184 Query 6798 GACTGGACGACTACAGTGCAGTGTGT----ATTGCCAACCACATTGATTATGAGAAGTGG 6853 ||| |||| ||| || | ||| || |||||||||| |||||||| || ||| Sbjct 185 GACAAAACGATTAC----CAATCTGTTACCATCGCCAACCACAACGATTATGAAAAATGG 240 Query 6854 AACAACCACCAGAGGAAGGAG--TCCAACAGATATGTATTCAGAGTTATGGGTCAATGTT 6911 ||||||||||| | |||||| || ||| ||| |||| || ||||| | || | Sbjct 241 AACAACCACCAAA--AAGGAGACGCCGACAACCCTGTGTTCACTGTGATGGGACGATTCT 298 Query 6912 TGGGGTACCCTAACTTGATT 6931 |||| | || |||||| || Sbjct 299 TGGGTTTGCCAAACTTGTTT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36574854329344