Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025392.1 Length=11121 Score E Sequences producing significant alignments: (Bits) Value seq17807 138 8e-29 seq70391 84.2 2e-12 >seq17807 Length=6784 Score = 138 bits (152), Expect = 8e-29 Identities = 570/887 (64%), Gaps = 33/887 (4%) Strand=Plus/Minus Query 6265 ATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCTTTTCATTG 6324 || ||||| || |||||||| ||| | ||| | ||| | || ||||||||||||||| Sbjct 5419 ATTATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTG 5360 Query 6325 ATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAACGCATTT- 6383 ||||||||||| | || | ||||| || | ||| | | |||||||||| | ||| Sbjct 5359 ATGTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTA 5300 Query 6384 TGTCCCTCTCTTTTATGGACTCACCATGGCTGATGATATGACTTCAGTCATCAAGAAAAT 6443 ||| || || || | || ||||| ||||| |||||| | || ||| | || || | Sbjct 5299 TGTGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCT 5240 Query 6444 GCTAGAAAGTTCATCCGGTCAAGGGTTGAATGACTATTCTGCAATCTCAATCGCAAATCA 6503 ||||| | || ||||| | ||||||| | || || ||||| || || Sbjct 5239 TCTAGATAACTCTGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCA 5180 Query 6504 CATAGATTATGAGAAATGGAACAATCACCAGAG----AAGAACATCAAACGAACCTGTAT 6559 | | |||||||| || ||||| ||||| ||| | ||| | || || | |||| Sbjct 5179 CGTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGC----AATGACACCGTAT 5124 Query 6560 TCAAAGTGATGGGACAATTTCTGGGATATCCAAATTTGATATCACGCACCCATGAATTCT 6619 |||||||||||||||| || || | || ||| | | || || || | || | Sbjct 5123 TCAAAGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTT 5064 Query 6620 TTGAGAAGAGTTTGATTTATTATAATGGAAGACCCGATTTGATG--AGAGTCCGGAATGG 6677 | |||| ||| | || |||||| |||| || | ||| || | |||| | Sbjct 5063 TCCAGAACAGTCTCATCTATTATGGGCCTCGACCAGACCTAATGGAAGTGATCGGA---G 5007 Query 6678 AGTGGTTGAGAATTCCTCA---GATACTAGAGTATGTTGGAATGGACAAGCCGGG-GGTC 6733 | | | |||| | | | | || ||| |||||| | || | ||| ||| || | Sbjct 5006 ATTCCCTCAGAAGTAAAGAAGCGTTCCT--AGTCTGTTGGGAAGGTC-AGCTGGGAGGGC 4950 Query 6734 TAGAGGGTTTGAGACAGAAGGGCTGGAGCATCCTAAATTTGTTGGTTATACAGAGGGAAT 6793 | ||||| | | |||||||| ||||||||| | ||| | | || || ||| || Sbjct 4949 TTGAGGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGG 4890 Query 6794 CCAAAATCCGTAATACATCTGTCAAGGTATTGGCACAAGGAGACAATCAAGTAATTTGTA 6853 |||| | | | || || | || ||| |||| || || |||||||| ||||| || | Sbjct 4889 CCAAGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCA 4830 Query 6854 CCCAATACAAGACT-----AAACAACATCGCTCGGAGATTGAGCTTAGAGGGGCATTGGA 6908 | || || ||| || ||||| | | | |||||| | || | | || Sbjct 4829 ACTCGTATAA-ACTCCCGAAATCAACAACCC----AAGCTGAGCTGAAAGCTCGAATCGA 4775 Query 6909 ACAGATGAAGTCGAACAA-TCAAACAATAATGGATTCAATTGAGCGGGGAACAAACAGGC 6967 | ||| | |||||| || | | || ||||| || | | || || | | | | | Sbjct 4774 CGAAGTGATGCAGAACAACTCCATC-ATCATGGAAGCAGTAGCTCGCGGTATAGAAAAAC 4716 Query 6968 TTGGGCTTTTAATCAATCAAGATGAAACAATGCAATCGGCTGATTATCTTAATTACGGTA 7027 |||| || | ||||||||||||||||| |||||| | || | |||| ||||| | Sbjct 4715 TTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATACGGCA 4656 Query 7028 AAGTTCCAATCTTCCGAGGGGTCATACGAGGACTAGAGACTAAAAGATGGTCCAGGGTGA 7087 ||||||| | | | |||| || | || ||| | ||| | ||||| ||||| | Sbjct 4655 AAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGGGTCA 4596 Query 7088 CCTGCGTCACCAATGATCAACTGCCTACTTGTGCTAATTTGCTGTCA 7134 | || ||||| || || || | || ||| || || || ||||| Sbjct 4595 CGTGTGTCACAAACGAACAGATCCCATCTTTGGCCAACGTGATGTCA 4549 >seq70391 Length=2338 Score = 84.2 bits (92), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 6257 ATGATTTGATAATCGGACTCAAAGGAAAAGAGAGAGAATTGAAGATTGCAGGTAGATTCT 6316 |||| | || ||||| |||||||| ||||| | ||| | ||| | ||| || |||| Sbjct 1826 ATGACCTCATCATCGGTCTCAAAGGCAAAGAACGCGAAATTAAGTAAGAAGGAAGGTTCT 1885 Query 6317 TTTCATTGATGTCATGGAAATTGCGAGAATATTTTGTGATAACCGAATATCTGATCAAAA 6376 |||| |||||||||||||| || | | || ||||| | ||| ||| | ||||||||| Sbjct 1886 TTTCCTTGATGTCATGGAAGATGAGGCAGTACTTTGTCACAACTGAACACCTGATCAAA- 1944 Query 6377 CGCATTT--TGTCCCTCTCTTTTATGG 6401 | |||| |||||| || || || || Sbjct 1945 -GAATTTTATGTCCCACTGTTCTAGGG 1970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35390385845040